| Positive correlation | Negative correlation | ||
| Gene | r | Gene | r |
| hand2 | 0.161 | dlx4a | -0.071 |
| mmel1 | 0.144 | emx2 | -0.067 |
| abcb11b | 0.132 | dlx3b | -0.062 |
| grem1a | 0.131 | dlx5a | -0.061 |
| gata5 | 0.126 | dlx1a | -0.061 |
| trabd2b | 0.124 | dlx4b | -0.056 |
| rhag | 0.121 | shox | -0.055 |
| TCF24 | 0.118 | osr2 | -0.049 |
| fbn2a.1 | 0.111 | nr2f2 | -0.049 |
| bambia | 0.107 | rgmd | -0.049 |
| cebpa | 0.103 | pcbd1 | -0.047 |
| sfrp2 | 0.102 | si:dkey-16p21.8 | -0.046 |
| tbx1 | 0.099 | nr2f1b | -0.045 |
| satb2 | 0.098 | ptmab | -0.045 |
| tnni1b | 0.097 | wnt5b | -0.044 |
| XLOC-015407 | 0.097 | pitx3 | -0.044 |
| XLOC-028299 | 0.097 | cald1b | -0.043 |
| BX005396.3 | 0.097 | nr2f1a | -0.043 |
| synpo2lb | 0.097 | hoxa13b | -0.042 |
| crb2a | 0.094 | nid1b | -0.042 |
| gata6 | 0.093 | tfap2a | -0.042 |
| cracr2b | 0.091 | si:dkey-164f24.2 | -0.041 |
| gdf6a | 0.090 | gyg1b | -0.040 |
| FITM1 (1 of many) | 0.090 | tuba8l3 | -0.040 |
| fam69c | 0.089 | grem2b | -0.039 |
| pcolcea | 0.087 | dlx2a | -0.038 |
| adamts15a | 0.085 | fgl1 | -0.038 |
| fzd7a | 0.085 | ramp2 | -0.038 |
| smad9 | 0.085 | fgfbp2a | -0.037 |
| tmem88b | 0.084 | dlx6a | -0.037 |
| shisa3 | 0.084 | crabp2a | -0.037 |
| mpped2 | 0.083 | rerglb | -0.036 |
| prlhr2a | 0.083 | smoc1 | -0.035 |
| olfml3b | 0.083 | barx1 | -0.035 |
| pcdh10a | 0.083 | rps21 | -0.035 |