| Positive correlation | Negative correlation | ||
| Gene | r | Gene | r |
| sfrp1a | 0.223 | stmn1b | -0.103 |
| nkx2.9 | 0.219 | myt1b | -0.102 |
| foxg1a | 0.184 | hoxb9a | -0.099 |
| ntn1a | 0.177 | elavl3 | -0.098 |
| helt | 0.164 | gpm6ab | -0.097 |
| sox3 | 0.160 | gng3 | -0.096 |
| sulf2b | 0.160 | hoxb3a | -0.095 |
| zgc:165461 | 0.158 | elavl4 | -0.094 |
| nr2f1b | 0.156 | hoxc3a | -0.093 |
| nkx2.1 | 0.143 | sncb | -0.092 |
| ptch2 | 0.140 | stxbp1a | -0.091 |
| cldn5a | 0.140 | vamp2 | -0.091 |
| si:ch73-30b17.2 | 0.138 | stx1b | -0.090 |
| fgfr2 | 0.138 | hoxb8a | -0.090 |
| nkx2.2b | 0.136 | pax3a | -0.090 |
| notch3 | 0.134 | snap25a | -0.088 |
| metrn | 0.130 | nsg2 | -0.088 |
| CR751602.2 | 0.125 | atp6v0cb | -0.085 |
| tuba8l | 0.124 | rtn1b | -0.084 |
| sox1b | 0.123 | cplx2 | -0.083 |
| pcdh19 | 0.122 | calm1a | -0.082 |
| plp1a | 0.119 | jagn1a | -0.080 |
| fzd8a | 0.118 | rtn1a | -0.080 |
| fzd7a | 0.118 | tmem59l | -0.080 |
| XLOC-003690 | 0.118 | ywhag2 | -0.080 |
| mn1a | 0.117 | dpysl3 | -0.079 |
| cd82a | 0.116 | cadm4 | -0.078 |
| lrrn1 | 0.114 | atp6v1e1b | -0.078 |
| nrarpb | 0.113 | stmn2a | -0.078 |
| her6 | 0.113 | hoxd3a | -0.078 |
| otx2a | 0.113 | csdc2a | -0.077 |
| pou3f3a | 0.113 | syt2a | -0.077 |
| ek1 | 0.111 | scrt2 | -0.077 |
| marcksl1a | 0.111 | rbfox1 | -0.076 |
| shisa3 | 0.110 | map1aa | -0.076 |