| Positive correlation | Negative correlation | ||
| Gene | r | Gene | r |
| gdf10a | 0.312 | ckbb | -0.154 |
| msx1b | 0.309 | gapdhs | -0.148 |
| zic2b | 0.297 | gpm6aa | -0.138 |
| msx3 | 0.284 | gpm6ab | -0.125 |
| atoh1a | 0.282 | slc1a2b | -0.122 |
| slc1a3a | 0.267 | cotl1 | -0.118 |
| atoh8 | 0.233 | gng3 | -0.115 |
| olig4 | 0.222 | elavl4 | -0.111 |
| pax3a | 0.221 | acbd7 | -0.110 |
| cdh6 | 0.211 | fabp7a | -0.110 |
| atoh1b | 0.205 | calm1a | -0.109 |
| pdgfaa | 0.199 | cadm4 | -0.107 |
| fzd10 | 0.195 | aldocb | -0.106 |
| cyp27c1 | 0.194 | atp6v0cb | -0.106 |
| zic5 | 0.188 | snap25a | -0.105 |
| epha2a | 0.185 | tpi1b | -0.105 |
| XLOC-003689 | 0.182 | rtn1b | -0.105 |
| hmgb2a | 0.181 | rnasekb | -0.104 |
| draxin | 0.180 | ywhah | -0.103 |
| nog1 | 0.179 | atp6v1e1b | -0.103 |
| lfng | 0.179 | sncb | -0.102 |
| ldlrad2 | 0.176 | fez1 | -0.102 |
| gas1a | 0.175 | stx1b | -0.100 |
| dla | 0.174 | ywhag2 | -0.098 |
| meis1a | 0.174 | slc6a1b | -0.098 |
| zic3 | 0.169 | nsg2 | -0.097 |
| her15.1 | 0.166 | si:dkeyp-75h12.5 | -0.097 |
| hmgb2b | 0.165 | atp5if1b | -0.097 |
| cep131 | 0.164 | mllt11 | -0.097 |
| hoxc3a | 0.164 | atp6v1g1 | -0.097 |
| hmga1a | 0.162 | efhd1 | -0.096 |
| zic2a | 0.162 | vat1 | -0.096 |
| wnt11r | 0.160 | stmn2a | -0.096 |
| mdka | 0.158 | vamp2 | -0.095 |
| cdkn1ca | 0.157 | zgc:65894 | -0.094 |