| Positive correlation | Negative correlation | ||
| Gene | r | Gene | r |
| atoh1a | 0.447 | gpm6ab | -0.142 |
| msx1b | 0.387 | gng3 | -0.140 |
| atoh8 | 0.319 | sncb | -0.136 |
| olig4 | 0.301 | gpm6aa | -0.134 |
| msx3 | 0.285 | ckbb | -0.133 |
| atoh1b | 0.271 | rtn1b | -0.129 |
| cdon | 0.233 | atp6v0cb | -0.126 |
| epha2a | 0.222 | gapdhs | -0.125 |
| her12 | 0.208 | elavl4 | -0.122 |
| id1 | 0.205 | stx1b | -0.118 |
| wnt10b | 0.205 | stmn2a | -0.118 |
| XLOC-003690 | 0.205 | vamp2 | -0.118 |
| cldn5a | 0.204 | ywhag2 | -0.117 |
| lfng | 0.203 | atp6v1e1b | -0.115 |
| gdf10a | 0.200 | stmn1b | -0.113 |
| fibinb | 0.194 | gap43 | -0.112 |
| her2 | 0.192 | rtn1a | -0.111 |
| XLOC-003689 | 0.191 | zgc:65894 | -0.111 |
| sox3 | 0.191 | ywhah | -0.111 |
| gas1a | 0.190 | calm1a | -0.109 |
| fzd10 | 0.186 | calm2a | -0.109 |
| nog2 | 0.185 | si:dkeyp-75h12.5 | -0.109 |
| her15.1 | 0.184 | rnasekb | -0.109 |
| masp1 | 0.177 | mllt11 | -0.108 |
| notch3 | 0.177 | stxbp1a | -0.108 |
| nr2f6b | 0.176 | snap25a | -0.108 |
| hmgb2a | 0.176 | tmsb2 | -0.107 |
| cdh6 | 0.173 | atp6v1g1 | -0.106 |
| zic1 | 0.170 | nsg2 | -0.106 |
| zic2b | 0.170 | id4 | -0.105 |
| rfx4 | 0.169 | fez1 | -0.104 |
| casz1 | 0.166 | atpv0e2 | -0.103 |
| stmn1a | 0.165 | olfm1b | -0.102 |
| sb:cb81 | 0.162 | gng2 | -0.101 |
| lrrn1 | 0.161 | kdm6bb | -0.101 |