| Positive correlation | Negative correlation | ||
| Gene | r | Gene | r |
| spon1b | 0.665 | ptmab | -0.206 |
| shha | 0.620 | ptmaa | -0.181 |
| sparcl1 | 0.591 | hnrnpaba | -0.180 |
| sulf1 | 0.552 | mdka | -0.174 |
| slit1b | 0.523 | calm2b | -0.166 |
| slit2 | 0.517 | gas1b | -0.165 |
| shhb | 0.498 | hoxb9a | -0.163 |
| clu | 0.498 | pax3a | -0.163 |
| wnt4b | 0.493 | tubb2b | -0.160 |
| ctgfa | 0.451 | h3f3d | -0.159 |
| cyr61l2 | 0.447 | hsp90ab1 | -0.157 |
| foxa2 | 0.443 | elavl3 | -0.154 |
| vasna | 0.433 | cirbpb | -0.149 |
| gpc5b | 0.429 | khdrbs1a | -0.144 |
| ptn | 0.424 | hnrnpa0l | -0.140 |
| myl9a | 0.422 | h3f3a | -0.138 |
| arxa | 0.417 | stmn1b | -0.137 |
| si:dkey-208c12.2 | 0.415 | si:dkey-276j7.1 | -0.134 |
| trabd2b | 0.404 | hoxc3a | -0.132 |
| npr3 | 0.402 | myt1b | -0.129 |
| metrnla | 0.397 | si:ch211-288g17.3 | -0.129 |
| foxa1 | 0.396 | cct2 | -0.129 |
| foxa | 0.391 | hnrnpa0b | -0.127 |
| spon1a | 0.375 | sp8b | -0.125 |
| slit1a | 0.361 | marcksb | -0.124 |
| ntn1a | 0.355 | hmgb3a | -0.124 |
| bmp1a | 0.352 | tmeff1b | -0.124 |
| bgnb | 0.347 | gng3 | -0.123 |
| lcn15 | 0.345 | gas1a | -0.121 |
| BX908782.3 | 0.343 | hmgb1b | -0.120 |
| igfbp7 | 0.341 | cirbpa | -0.119 |
| olfml2ba | 0.340 | elavl4 | -0.119 |
| col9a3 | 0.336 | draxin | -0.119 |
| ptgs2a | 0.330 | stx1b | -0.117 |
| scospondin | 0.325 | myt1a | -0.117 |