| Positive correlation | Negative correlation | ||
| Gene | r | Gene | r |
| nkx2.4b | 0.705 | meis1b | -0.087 |
| prdx1 | 0.408 | mab21l1 | -0.075 |
| nkx2.1 | 0.344 | mab21l2 | -0.071 |
| shha | 0.268 | meis2a | -0.070 |
| bsx | 0.263 | hoxb3a | -0.069 |
| fezf2 | 0.240 | irx1a | -0.065 |
| si:dkeyp-110a12.4 | 0.240 | pax3a | -0.064 |
| rx3 | 0.226 | scrt2 | -0.064 |
| id3 | 0.217 | gas1b | -0.060 |
| fzd5 | 0.213 | en2b | -0.060 |
| foxd2 | 0.208 | zeb2a | -0.058 |
| LOC110438203 | 0.206 | zic3 | -0.056 |
| sox1b | 0.204 | meis2b | -0.055 |
| slc1a3b | 0.194 | rbfox1 | -0.055 |
| il34 | 0.186 | irx3b | -0.055 |
| si:dkey-219c10.4 | 0.177 | ebf3a | -0.055 |
| tbx3a | 0.168 | zic2b | -0.054 |
| LOC108191313 | 0.157 | rarga | -0.054 |
| CRACR2A | 0.154 | gas1a | -0.054 |
| nkx2.2b | 0.150 | zic2a | -0.054 |
| ccka | 0.149 | irx5a | -0.053 |
| fgfrl1a | 0.145 | ebf1a | -0.053 |
| ptprn2 | 0.143 | irx3a | -0.052 |
| capslb | 0.140 | pax6a | -0.052 |
| tbx2b | 0.135 | scrt1a | -0.052 |
| slc9a3r1a | 0.129 | elavl3 | -0.050 |
| sox1a | 0.127 | raraa | -0.050 |
| ak5l | 0.127 | syt2a | -0.050 |
| foxd1 | 0.126 | gpm6ab | -0.049 |
| nme5 | 0.126 | zic1 | -0.049 |
| si:ch211-131k2.2 | 0.125 | apoeb | -0.049 |
| pacrg | 0.125 | BX927258.1 | -0.048 |
| ankrd34bb | 0.125 | msx1b | -0.048 |
| wnt16 | 0.124 | tfap2a | -0.047 |
| tead1b | 0.121 | ebf2 | -0.047 |