| Positive correlation | Negative correlation | ||
| Gene | r | Gene | r |
| nkx2.4b | 0.445 | pax6a | -0.025 |
| nkx2.1 | 0.250 | pax6b | -0.024 |
| lft1 | 0.194 | vsx2 | -0.018 |
| ndr2 | 0.181 | cadm3 | -0.018 |
| LOC110438203 | 0.156 | rorb | -0.016 |
| nkx2.2b | 0.148 | hmx1 | -0.016 |
| lft2 | 0.145 | rps10 | -0.016 |
| si:dkeyp-110a12.4 | 0.122 | krt4 | -0.016 |
| CRACR2A | 0.122 | rpl37 | -0.015 |
| CR847971.1 | 0.121 | hes2.2 | -0.015 |
| LOC101882159 | 0.121 | cyt1l | -0.015 |
| LOC110440131 | 0.111 | sox18 | -0.015 |
| si:ch1073-22e3.1 | 0.108 | hbae3 | -0.014 |
| LO017815.1 | 0.107 | ndufa4l | -0.014 |
| si:dkey-219c10.4 | 0.106 | hmx4 | -0.014 |
| foxa | 0.104 | hbbe1.3 | -0.014 |
| nkx2.9 | 0.104 | fabp11a | -0.014 |
| gsc | 0.103 | hes2.1 | -0.013 |
| nts | 0.103 | atp5mc3b | -0.013 |
| LOC110438056 | 0.102 | si:ch211-284e13.6 | -0.013 |
| foxb1b | 0.099 | foxn4 | -0.013 |
| si:ch211-131k2.2 | 0.096 | neurod4 | -0.013 |
| lrp2bp | 0.095 | tkta | -0.012 |
| dbx1a | 0.095 | rbpms2b | -0.012 |
| shha | 0.092 | atp5f1b | -0.012 |
| prdx1 | 0.088 | wu:fi46h04 | -0.012 |
| th2 | 0.088 | sinhcafl | -0.012 |
| LOC110439629 | 0.085 | mab21l1 | -0.012 |
| sox1b | 0.083 | actc1b | -0.011 |
| dlx1a | 0.082 | ahcy | -0.011 |
| ankrd63 | 0.081 | foxg1b | -0.011 |
| bsx | 0.079 | atp2a1 | -0.011 |
| lhx5 | 0.077 | si:dkeyp-34c12.1 | -0.011 |
| sox19a | 0.077 | nr2f5 | -0.011 |
| zgc:66426 | 0.075 | pvalb1 | -0.011 |