| Positive correlation | Negative correlation | ||
| Gene | r | Gene | r |
| nkx2.9 | 0.502 | mdka | -0.210 |
| nkx2.2a | 0.449 | calm2b | -0.157 |
| foxa | 0.370 | gas1b | -0.152 |
| ntn1a | 0.361 | pax3a | -0.134 |
| ntn1b | 0.319 | hoxb9a | -0.119 |
| sulf2b | 0.307 | mdkb | -0.119 |
| foxa2 | 0.267 | elavl4 | -0.112 |
| ptch2 | 0.250 | stmn1b | -0.111 |
| spon1b | 0.239 | gpm6ab | -0.111 |
| col11a1a | 0.224 | sp8b | -0.109 |
| egf | 0.214 | gas1a | -0.108 |
| sox1b | 0.212 | gng3 | -0.106 |
| sulf1 | 0.208 | boc | -0.103 |
| nkx6.2 | 0.205 | sncb | -0.099 |
| sdc4 | 0.202 | hoxa9a | -0.098 |
| metrnla | 0.202 | rtn1b | -0.098 |
| si:ch73-265d7.2 | 0.199 | stx1b | -0.097 |
| stox1 | 0.197 | irx3a | -0.096 |
| plekhn1 | 0.195 | snap25a | -0.095 |
| fn1a | 0.188 | cplx2 | -0.095 |
| XLOC-003689 | 0.187 | pax6a | -0.094 |
| pcdh19 | 0.182 | pax6b | -0.094 |
| fzd8a | 0.178 | rbfox1 | -0.091 |
| nkx6.1 | 0.175 | stmn2a | -0.090 |
| si:ch211-226m7.4 | 0.172 | hoxc3a | -0.090 |
| phox2bb | 0.167 | ank2b | -0.089 |
| XLOC-003690 | 0.166 | bcam | -0.089 |
| tbata | 0.166 | tmem59l | -0.088 |
| cldn5a | 0.162 | rbfox3a | -0.088 |
| adrb3a | 0.162 | sp8a | -0.088 |
| her15.1 | 0.162 | ywhag2 | -0.088 |
| heyl | 0.161 | sncgb | -0.088 |
| cyyr1 | 0.159 | stxbp1a | -0.088 |
| daw1 | 0.157 | aplp1 | -0.088 |
| btg2 | 0.154 | atp5if1b | -0.086 |