| Positive correlation | Negative correlation | ||
| Gene | r | Gene | r |
| nkx2.2b | 0.449 | mdka | -0.195 |
| nkx2.9 | 0.369 | calm2b | -0.165 |
| sulf2b | 0.264 | gas1b | -0.149 |
| ntn1b | 0.232 | pax3a | -0.135 |
| ntn1a | 0.227 | hoxb9a | -0.119 |
| foxa | 0.217 | gas1a | -0.108 |
| ptch2 | 0.211 | sp8b | -0.108 |
| plekhn1 | 0.202 | boc | -0.107 |
| egf | 0.196 | irx3a | -0.102 |
| helt | 0.183 | hoxc3a | -0.097 |
| kcnj11l | 0.180 | irx5a | -0.092 |
| egfra | 0.177 | syt2a | -0.092 |
| cd82a | 0.172 | sp8a | -0.092 |
| olig2 | 0.171 | irx3b | -0.090 |
| olig1 | 0.170 | msx1b | -0.088 |
| sulf1 | 0.161 | hoxa9a | -0.088 |
| foxa2 | 0.161 | pax6b | -0.087 |
| zcchc24 | 0.159 | hoxb10a | -0.083 |
| wnt4b | 0.156 | scrt2 | -0.082 |
| crip2 | 0.156 | bcam | -0.082 |
| wnt7aa | 0.155 | mab21l2 | -0.081 |
| fgfr2 | 0.154 | rbfox1 | -0.080 |
| spon1b | 0.150 | prss35 | -0.079 |
| fzd8a | 0.148 | sncgb | -0.079 |
| si:busm1-57f23.1 | 0.147 | hoxd3a | -0.079 |
| stox1 | 0.147 | elavl4 | -0.077 |
| fn1a | 0.145 | onecut1 | -0.075 |
| heyl | 0.144 | ank2b | -0.075 |
| pcdh19 | 0.141 | robo2 | -0.075 |
| sox1b | 0.141 | sncb | -0.074 |
| metrnla | 0.140 | hoxa10b | -0.074 |
| ppp1r9alb | 0.138 | cplx2l | -0.074 |
| aplnrb | 0.137 | hoxc8a | -0.074 |
| lrp8 | 0.137 | cdx4 | -0.074 |
| sdc4 | 0.135 | stmn2a | -0.074 |