| Positive correlation | Negative correlation | ||
| Gene | r | Gene | r |
| nkx2.2b | 0.223 | meis1b | -0.072 |
| olig2 | 0.181 | mab21l1 | -0.068 |
| nkx2.9 | 0.164 | pax3a | -0.062 |
| si:dkeyp-110a12.4 | 0.155 | gas1b | -0.060 |
| vax1 | 0.132 | mab21l2 | -0.060 |
| six6a | 0.129 | irx5a | -0.055 |
| eno4 | 0.127 | gas1a | -0.054 |
| ptch2 | 0.126 | npm1a | -0.054 |
| nkx2.4b | 0.124 | irx3a | -0.052 |
| nkx2.4a | 0.120 | hoxb3a | -0.051 |
| sox1b | 0.118 | boc | -0.050 |
| tcf7l2 | 0.116 | apoeb | -0.050 |
| vax2 | 0.112 | dkc1 | -0.050 |
| shha | 0.110 | fbl | -0.047 |
| six6b | 0.104 | nop58 | -0.047 |
| ntn1b | 0.102 | msx1b | -0.047 |
| lhx5 | 0.097 | anp32e | -0.046 |
| six3a | 0.094 | nop2 | -0.045 |
| arxa | 0.092 | si:ch211-152c2.3 | -0.045 |
| dlx2a | 0.088 | hmgb2a | -0.044 |
| foxd1 | 0.087 | pax7a | -0.044 |
| gata3 | 0.086 | hspb1 | -0.044 |
| tal1 | 0.085 | snu13b | -0.044 |
| gata2a | 0.084 | rsl1d1 | -0.043 |
| marcksl1a | 0.084 | apoc1 | -0.043 |
| sox1a | 0.083 | apela | -0.043 |
| zgc:165461 | 0.083 | gar1 | -0.042 |
| mbd3b | 0.081 | ebf3a | -0.042 |
| six3b | 0.078 | ddx18 | -0.041 |
| sox4a | 0.076 | meis2b | -0.041 |
| pknox2 | 0.074 | nop56 | -0.041 |
| rgma | 0.073 | pax7b | -0.041 |
| sox5 | 0.071 | anp32b | -0.039 |
| arxb | 0.069 | lyar | -0.039 |
| ptprn2 | 0.069 | zmp:0000000624 | -0.039 |