| Positive correlation | Negative correlation | ||
| Gene | r | Gene | r |
| msx1b | 0.380 | gpm6aa | -0.157 |
| olig3 | 0.285 | stmn1b | -0.149 |
| atoh1a | 0.270 | rtn1a | -0.145 |
| atoh8 | 0.236 | ckbb | -0.145 |
| id1 | 0.235 | gpm6ab | -0.144 |
| cdon | 0.230 | gng3 | -0.141 |
| gas1a | 0.211 | sncb | -0.136 |
| zic2b | 0.206 | tuba1c | -0.134 |
| fzd10 | 0.190 | rtn1b | -0.128 |
| pax3a | 0.183 | atp6v0cb | -0.128 |
| ved | 0.181 | ptmaa | -0.128 |
| akap12b | 0.181 | elavl4 | -0.127 |
| msx1a | 0.180 | gapdhs | -0.126 |
| olig4 | 0.173 | vamp2 | -0.122 |
| hmgb2a | 0.172 | rnasekb | -0.121 |
| boc | 0.170 | elavl3 | -0.120 |
| cldn5a | 0.166 | ywhah | -0.118 |
| bmp5 | 0.166 | stx1b | -0.118 |
| wnt10b | 0.165 | ywhag2 | -0.117 |
| gdf10a | 0.164 | fez1 | -0.116 |
| atoh1b | 0.159 | tmsb | -0.116 |
| gas1b | 0.158 | stmn2a | -0.116 |
| msx2b | 0.156 | atp6v1e1b | -0.115 |
| wls | 0.153 | calm1a | -0.115 |
| mdka | 0.152 | si:dkeyp-75h12.5 | -0.114 |
| rfx4 | 0.151 | stxbp1a | -0.114 |
| mki67 | 0.150 | gng2 | -0.114 |
| chaf1a | 0.149 | zgc:65894 | -0.111 |
| stmn1a | 0.149 | mllt11 | -0.111 |
| ccnd1 | 0.147 | gap43 | -0.110 |
| msna | 0.147 | atp6v1g1 | -0.109 |
| bambia | 0.146 | snap25a | -0.108 |
| zic5 | 0.145 | zc4h2 | -0.107 |
| axin2 | 0.145 | dpysl3 | -0.107 |
| fibinb | 0.144 | id4 | -0.105 |