| Positive correlation | Negative correlation | ||
| Gene | r | Gene | r |
| msx1b | 0.376 | cotl1 | -0.107 |
| gdf10a | 0.364 | gng3 | -0.104 |
| zic2b | 0.345 | sncb | -0.103 |
| pax3a | 0.305 | ntn1a | -0.102 |
| slc1a3a | 0.303 | gng2 | -0.102 |
| zic5 | 0.300 | vamp2 | -0.101 |
| adamtsl5 | 0.284 | stxbp1a | -0.101 |
| olig3 | 0.284 | rtn1a | -0.100 |
| zic2a | 0.281 | stx1b | -0.099 |
| fzd10 | 0.274 | elavl3 | -0.098 |
| gas1a | 0.264 | elavl4 | -0.098 |
| zic1 | 0.254 | ywhah | -0.098 |
| wnt10b | 0.251 | rnasekb | -0.097 |
| pdgfaa | 0.250 | calm1a | -0.096 |
| mdka | 0.241 | gpm6aa | -0.095 |
| boc | 0.235 | atp6v0cb | -0.094 |
| lmx1a | 0.232 | snap25a | -0.094 |
| prss35 | 0.232 | gapdhs | -0.093 |
| bmp6 | 0.230 | tmsb | -0.092 |
| atoh1a | 0.229 | rtn1b | -0.092 |
| cdh6 | 0.229 | id4 | -0.091 |
| wnt10a | 0.229 | mllt11 | -0.091 |
| bmp4 | 0.222 | cplx2 | -0.090 |
| zic3 | 0.219 | jagn1a | -0.090 |
| zgc:110699 | 0.217 | sulf2b | -0.090 |
| atoh8 | 0.207 | zgc:65894 | -0.089 |
| col4a5 | 0.207 | stmn1b | -0.088 |
| crabp2a | 0.203 | tmem59l | -0.088 |
| gdf7 | 0.203 | onecut1 | -0.088 |
| pmp22a | 0.202 | si:dkey-276j7.1 | -0.087 |
| ezra | 0.202 | nsg2 | -0.087 |
| bmper | 0.202 | nkx6.1 | -0.087 |
| col4a6 | 0.201 | syt2a | -0.087 |
| cdon | 0.200 | stmn2a | -0.087 |
| meis1a | 0.198 | csdc2a | -0.086 |