| Positive correlation | Negative correlation | ||
| Gene | r | Gene | r |
| meis2b | 0.266 | col9a1a | -0.177 |
| meis1a | 0.247 | col2a1a | -0.174 |
| col5a2a | 0.202 | col9a2 | -0.160 |
| pbx3b | 0.186 | col9a3 | -0.154 |
| meis2a | 0.185 | fxyd1 | -0.150 |
| meis3 | 0.183 | cthrc1a | -0.147 |
| jun | 0.181 | col11a2 | -0.136 |
| hoxb3a | 0.164 | cnmd | -0.133 |
| znf503 | 0.163 | col11a1a | -0.132 |
| hoxc3a | 0.160 | VIT | -0.128 |
| aldh1a2 | 0.148 | matn4 | -0.119 |
| rbp5 | 0.147 | epyc | -0.116 |
| pbx1a | 0.146 | fgfbp2b | -0.113 |
| col1a1b | 0.143 | pitx3 | -0.108 |
| crabp1b | 0.139 | zgc:158423 | -0.107 |
| hoxb8a | 0.136 | otos | -0.103 |
| tmem88b | 0.135 | fibina | -0.101 |
| gsc | 0.135 | si:dkey-6n6.1 | -0.100 |
| hoxb5a | 0.133 | AL929222.2 | -0.099 |
| pbx1b | 0.131 | ecrg4a | -0.098 |
| cxcl12b | 0.131 | si:dkey-164f24.2 | -0.096 |
| sfrp1a | 0.130 | sox9a | -0.096 |
| si:dkey-261h17.1 | 0.127 | apof | -0.096 |
| sult1st1 | 0.124 | tgfbi | -0.095 |
| hoxb1b | 0.123 | ucmab | -0.089 |
| ptmaa | 0.123 | tnn | -0.088 |
| sostdc1a | 0.122 | tbx15 | -0.088 |
| tmem98 | 0.122 | gyg1b | -0.088 |
| hoxb5b | 0.122 | slc7a5 | -0.088 |
| hoxb2a | 0.121 | igfbp2a | -0.088 |
| si:ch73-46j18.5 | 0.121 | mia | -0.085 |
| adamts15a | 0.120 | col2a1b | -0.084 |
| hoxc1a | 0.120 | si:dkeyp-106c3.1 | -0.084 |
| ier5l | 0.119 | BX324132.3 | -0.084 |
| hoxc8a | 0.118 | itga10 | -0.084 |