| Positive correlation | Negative correlation | ||
| Gene | r | Gene | r |
| meis1b | 0.247 | col9a1a | -0.134 |
| znf503 | 0.209 | col2a1a | -0.129 |
| hoxa2b | 0.196 | col9a2 | -0.110 |
| hoxb3a | 0.180 | col9a3 | -0.108 |
| meis3 | 0.176 | VIT | -0.106 |
| rbp5 | 0.175 | fxyd1 | -0.103 |
| meis2b | 0.170 | BX324132.3 | -0.103 |
| col5a2a | 0.162 | foxl2a | -0.103 |
| sult1st1 | 0.154 | col11a2 | -0.097 |
| hoxb2a | 0.150 | col11a1a | -0.093 |
| hoxc3a | 0.143 | pitx3 | -0.093 |
| meis2a | 0.142 | alx1 | -0.092 |
| hoxb5a | 0.135 | cthrc1a | -0.089 |
| hoxb8a | 0.134 | si:dkey-164f24.2 | -0.086 |
| hoxa3a | 0.134 | cldn11a | -0.084 |
| hoxb1b | 0.128 | fgfbp2b | -0.081 |
| col1a1b | 0.126 | slc7a5 | -0.081 |
| gdf11 | 0.125 | zgc:158423 | -0.081 |
| prrx1a | 0.120 | pitx2 | -0.078 |
| hoxc1a | 0.119 | gyg1b | -0.077 |
| zgc:56699 | 0.116 | slc29a1a | -0.076 |
| hspa8 | 0.116 | cnmd | -0.075 |
| si:ch211-286o17.1 | 0.116 | lmx1bb | -0.074 |
| pmp22a | 0.114 | col8a2 | -0.074 |
| tmem119b | 0.113 | fabp7a | -0.073 |
| tpm4a | 0.112 | epyc | -0.072 |
| gsc | 0.112 | ecrg4a | -0.072 |
| hoxb6a | 0.111 | gata2a | -0.070 |
| aplnr2 | 0.111 | atp1b1a | -0.070 |
| jun | 0.109 | slc38a3a | -0.070 |
| nr2f1b | 0.109 | tmsb | -0.069 |
| mfap2 | 0.109 | thrap3a | -0.069 |
| tmem88b | 0.109 | si:dkey-6n6.1 | -0.069 |
| cyp26a1 | 0.108 | ucmab | -0.068 |
| si:dkey-238c7.16 | 0.106 | mia | -0.068 |