| Positive correlation | Negative correlation | ||
| Gene | r | Gene | r |
| pax8 | 0.288 | prdx2 | -0.086 |
| mnx1 | 0.234 | hbae1.1 | -0.081 |
| hoxc3a | 0.226 | hbbe1.3 | -0.078 |
| cdx4 | 0.225 | hbae3 | -0.076 |
| hoxb10a | 0.217 | cahz | -0.076 |
| wu:fb97g03 | 0.210 | hemgn | -0.075 |
| vox | 0.201 | hbbe1.1 | -0.075 |
| BX005254.3 | 0.199 | hbbe2 | -0.075 |
| tbx16 | 0.194 | hbae1.3 | -0.074 |
| hoxb7a | 0.189 | blvrb | -0.072 |
| cx43.4 | 0.188 | slc4a1a | -0.071 |
| npas4l | 0.186 | gpx1a | -0.070 |
| hes6 | 0.184 | tspo | -0.069 |
| tbxtb | 0.183 | creg1 | -0.065 |
| BX001014.2 | 0.178 | nt5c2l1 | -0.063 |
| pax2a | 0.172 | alas2 | -0.063 |
| hspb1 | 0.165 | hbbe1.2 | -0.063 |
| BX927258.1 | 0.165 | si:ch211-250g4.3 | -0.062 |
| meox1 | 0.161 | tmod4 | -0.057 |
| her7 | 0.160 | plac8l1 | -0.056 |
| mnx2b | 0.159 | epb41b | -0.056 |
| cdx1a | 0.158 | si:ch211-207c6.2 | -0.053 |
| hoxc6b | 0.157 | zgc:163057 | -0.053 |
| ripply2 | 0.154 | nmt1b | -0.053 |
| dact2 | 0.154 | si:ch211-227m13.1 | -0.052 |
| lsp1 | 0.152 | laptm5 | -0.048 |
| her1 | 0.152 | coro1a | -0.047 |
| hoxc8a | 0.152 | pvalb1 | -0.047 |
| wnt5b | 0.152 | tmem14ca | -0.046 |
| fn1b | 0.151 | klf1 | -0.045 |
| fgf10b | 0.150 | add2 | -0.045 |
| apela | 0.150 | selenoj | -0.045 |
| fbln1 | 0.149 | mcl1a | -0.044 |
| hnf1bb | 0.149 | sptb | -0.044 |
| BX927395.1 | 0.148 | pvalb2 | -0.044 |