| Positive correlation | Negative correlation | ||
| Gene | r | Gene | r |
| hes6 | 0.362 | krt8 | -0.162 |
| hoxb10a | 0.337 | krt18a.1 | -0.155 |
| fgf8a | 0.326 | col11a1a | -0.135 |
| gdf11 | 0.316 | col2a1a | -0.132 |
| her12 | 0.312 | cmn | -0.130 |
| hoxd10a | 0.300 | col8a1a | -0.129 |
| fgf20a | 0.290 | col9a1b | -0.128 |
| hoxd12a | 0.289 | col9a2 | -0.127 |
| her15.1 | 0.279 | col9a3 | -0.127 |
| nradd | 0.278 | cnmd | -0.127 |
| wnt5b | 0.275 | zmp:0000000760 | -0.127 |
| cdx4 | 0.267 | hdlbpa | -0.123 |
| BX005254.3 | 0.266 | si:ch73-23l24.1 | -0.123 |
| XLOC-003690 | 0.265 | zgc:113232 | -0.120 |
| alpi.1 | 0.259 | zgc:162730 | -0.119 |
| lrrc17 | 0.253 | selenom | -0.118 |
| hoxd11a | 0.251 | sparc | -0.118 |
| fgf3 | 0.251 | ucmab | -0.113 |
| fzd10 | 0.250 | col11a2 | -0.111 |
| hoxa9a | 0.250 | tgfb3 | -0.110 |
| pcp4a | 0.248 | agtrap | -0.110 |
| tagln3b | 0.247 | golim4b | -0.110 |
| wnt2bb | 0.245 | CR381618.1 | -0.107 |
| her1 | 0.235 | col2a1b | -0.106 |
| her4.1 | 0.235 | epyc | -0.106 |
| fgf4 | 0.233 | matn3a | -0.105 |
| myclb | 0.230 | tgfb2 | -0.104 |
| her7 | 0.228 | anxa13 | -0.103 |
| tll1 | 0.224 | eef1da | -0.100 |
| hoxa10b | 0.223 | pleca | -0.100 |
| aplnr2 | 0.223 | susd5 | -0.100 |
| cdaa | 0.219 | anxa2a | -0.100 |
| hoxd9a | 0.219 | gas2b | -0.099 |
| hoxc3a | 0.215 | mmp23bb | -0.099 |
| dand5 | 0.212 | krt5 | -0.099 |