| Positive correlation | Negative correlation | ||
| Gene | r | Gene | r |
| blf | 0.310 | tbxta | -0.328 |
| nanog | 0.308 | cdx4 | -0.287 |
| cited4b | 0.296 | wnt11f2 | -0.275 |
| mkrn4 | 0.279 | apoc1 | -0.274 |
| glulb | 0.278 | eve1 | -0.261 |
| cxcr4b | 0.274 | hes6 | -0.225 |
| h1m | 0.273 | BX927327.1 | -0.220 |
| zgc:173742 | 0.264 | mespab | -0.214 |
| cxcr4a | 0.261 | wnt5b | -0.212 |
| si:ch211-173m16.2 | 0.258 | sebox | -0.211 |
| ccna1 | 0.254 | wu:fb97g03 | -0.209 |
| zgc:100951 | 0.250 | osr1 | -0.206 |
| rbm7 | 0.249 | lhx1a | -0.205 |
| epcam | 0.247 | efnb2b | -0.204 |
| gtf2a1 | 0.246 | msgn1 | -0.195 |
| npc2 | 0.244 | ptmab | -0.193 |
| sox3 | 0.243 | sp5a | -0.189 |
| shisa2a | 0.240 | ybx1 | -0.188 |
| acp5a | 0.239 | tpbga | -0.187 |
| cdca7a | 0.237 | ndr2 | -0.184 |
| cldnd | 0.235 | dkk1b | -0.181 |
| si:dkey-11o15.10 | 0.235 | zic2a | -0.178 |
| si:dkey-68o6.5 | 0.234 | p4ha2 | -0.178 |
| zgc:56676 | 0.233 | gata5 | -0.177 |
| ctsba | 0.230 | fgf8a | -0.174 |
| spink2.1 | 0.228 | eef1a1l1 | -0.173 |
| dnajc1 | 0.228 | flrt3 | -0.173 |
| ccna2 | 0.226 | cyp27c1 | -0.172 |
| asb11 | 0.218 | FP102169.1 | -0.171 |
| zgc:64022 | 0.217 | im:7138239 | -0.171 |
| gdf3 | 0.216 | NC-002333.4 | -0.169 |
| dctpp1 | 0.215 | hmgn2 | -0.169 |
| lamp2 | 0.215 | aldh1a2 | -0.168 |
| psme3 | 0.214 | lft1 | -0.166 |
| brd2a | 0.214 | pitx2 | -0.164 |