| Positive correlation | Negative correlation | ||
| Gene | r | Gene | r |
| shha | 0.271 | cyt1 | -0.174 |
| sox2 | 0.219 | cyt1l | -0.139 |
| shhb | 0.204 | krtt1c19e | -0.132 |
| pitx2 | 0.195 | krt5 | -0.132 |
| pitx1 | 0.173 | pfn1 | -0.131 |
| sox19b | 0.171 | ecrg4b | -0.130 |
| wnt11r | 0.169 | rbp4 | -0.127 |
| sostdc1a | 0.168 | col11a1a | -0.124 |
| fgfrl1a | 0.156 | krt4 | -0.124 |
| foxa2 | 0.156 | col1a1b | -0.124 |
| ptch2 | 0.150 | si:dkey-16p21.8 | -0.121 |
| tcf12 | 0.150 | zgc:175088 | -0.121 |
| krt18a.1 | 0.145 | col2a1b | -0.120 |
| fabp2 | 0.144 | si:dkey-33c14.3 | -0.117 |
| inhbaa | 0.142 | anxa1a | -0.114 |
| fgfrl1b | 0.141 | col1a2 | -0.114 |
| ccnd2a | 0.140 | col1a1a | -0.113 |
| anos1a | 0.138 | thy1 | -0.113 |
| klf5l | 0.137 | lgals1l1 | -0.109 |
| fxyd1 | 0.136 | aep1 | -0.106 |
| nkx3.3 | 0.136 | actb1 | -0.105 |
| sox4b | 0.134 | zgc:136930 | -0.104 |
| sox3 | 0.134 | wu:fa03e10 | -0.104 |
| hmgn2 | 0.134 | tmsb1 | -0.104 |
| dnmt3bb.1 | 0.131 | pleca | -0.102 |
| hmgb1b | 0.131 | spaca4l | -0.099 |
| zgc:163121 | 0.130 | si:dkey-183i3.5 | -0.099 |
| ephb4a | 0.129 | cfl1l | -0.099 |
| alx1 | 0.129 | itgb3a | -0.097 |
| tuba8l3 | 0.129 | s100a10b | -0.097 |
| pmp22a | 0.128 | col14a1b | -0.096 |
| si:dkey-42i9.4 | 0.127 | col5a1 | -0.096 |
| hmgb2b | 0.125 | cap1 | -0.096 |
| h3f3a | 0.125 | col17a1a | -0.095 |
| ociad2 | 0.125 | actb2 | -0.095 |