| Positive correlation | Negative correlation | ||
| Gene | r | Gene | r |
| nanog | 0.636 | calm1a | -0.132 |
| h1m | 0.625 | rnasekb | -0.131 |
| ccna1 | 0.605 | tuba1c | -0.129 |
| cldnd | 0.592 | atp6v0cb | -0.127 |
| zgc:173742 | 0.591 | gpm6aa | -0.125 |
| si:dkey-68o6.5 | 0.554 | rtn1a | -0.119 |
| zgc:100951 | 0.534 | nova2 | -0.116 |
| si:dkeyp-114g9.1 | 0.515 | si:ch1073-429i10.3.1 | -0.115 |
| cth1 | 0.509 | stmn1b | -0.114 |
| zgc:113424 | 0.507 | ccni | -0.113 |
| avd | 0.501 | gng3 | -0.112 |
| nnr | 0.499 | hbbe1.3 | -0.112 |
| h2af1al | 0.496 | gpm6ab | -0.111 |
| zgc:77118 | 0.494 | hbae3 | -0.109 |
| map1lc3c | 0.480 | sncb | -0.108 |
| pabpc1l | 0.474 | vamp2 | -0.108 |
| si:ch211-173m16.2 | 0.464 | mdkb | -0.107 |
| wee2 | 0.463 | elavl3 | -0.102 |
| ctss2.1 | 0.451 | ywhag2 | -0.102 |
| pabpn1l | 0.448 | hbae1.1 | -0.101 |
| gdf3 | 0.447 | krt4 | -0.101 |
| si:ch1073-80i24.3 | 0.445 | snap25a | -0.100 |
| si:ch211-132b12.8 | 0.445 | elavl4 | -0.099 |
| zgc:56699 | 0.445 | gapdhs | -0.099 |
| si:dkey-228b2.6 | 0.444 | h2afy2 | -0.099 |
| asb11 | 0.432 | stx1b | -0.099 |
| BX005461.1 | 0.425 | fam168a | -0.098 |
| LOC101885477 | 0.424 | olfm1b | -0.098 |
| mcm6l | 0.422 | zgc:65894 | -0.098 |
| si:ch73-303b9.1 | 0.421 | stxbp1a | -0.098 |
| si:rp71-45k5.2 | 0.420 | atpv0e2 | -0.097 |
| ddx4 | 0.419 | pvalb1 | -0.097 |
| pou5f3 | 0.412 | cyt1 | -0.096 |
| LOC101885485 | 0.409 | hbbe1.1 | -0.096 |
| tatdn2 | 0.409 | rtn1b | -0.096 |