| Positive correlation | Negative correlation | ||
| Gene | r | Gene | r |
| hoxb5b | 0.305 | id1 | -0.074 |
| hoxb5a | 0.269 | XLOC-003690 | -0.069 |
| hoxb6b | 0.237 | her15.1 | -0.064 |
| hoxc4a | 0.222 | atp1a1b | -0.063 |
| hoxb6a | 0.189 | fabp7a | -0.063 |
| hoxa5a | 0.163 | cd82a | -0.063 |
| gap43 | 0.150 | gpm6bb | -0.062 |
| hoxc1a | 0.144 | notch3 | -0.061 |
| chodl | 0.141 | cldn5a | -0.060 |
| hoxc6a | 0.139 | CU467822.1 | -0.059 |
| stmn2a | 0.133 | mdka | -0.059 |
| ywhag2 | 0.131 | sparc | -0.058 |
| slc18a3a | 0.126 | qki2 | -0.056 |
| prph | 0.125 | sox19a | -0.055 |
| tppp2 | 0.124 | sox3 | -0.055 |
| isl2a | 0.123 | her6 | -0.055 |
| gng3 | 0.123 | COX7A2 (1 of many) | -0.055 |
| islr2 | 0.121 | msi1 | -0.053 |
| rbfox1 | 0.119 | vamp3 | -0.053 |
| tuba2 | 0.116 | efhd1 | -0.051 |
| stmn4l | 0.115 | sdc4 | -0.051 |
| id4 | 0.115 | XLOC-003689 | -0.050 |
| snap25a | 0.114 | her4.2 | -0.050 |
| syt2a | 0.112 | si:ch211-286b5.5 | -0.050 |
| rtn1b | 0.110 | cd63 | -0.050 |
| elavl4 | 0.108 | her4.1 | -0.050 |
| hoxb3a | 0.108 | zgc:165461 | -0.050 |
| sncb | 0.107 | ppap2d | -0.049 |
| map1b | 0.107 | ptn | -0.049 |
| zgc:65894 | 0.106 | psat1 | -0.049 |
| tac1 | 0.106 | ptch2 | -0.048 |
| slit3 | 0.106 | sox2 | -0.048 |
| si:ch211-247j9.1 | 0.105 | slc1a2b | -0.048 |
| stxbp1a | 0.105 | fgfr2 | -0.047 |
| gng2 | 0.104 | metrnla | -0.047 |