| Positive correlation | Negative correlation | ||
| Gene | r | Gene | r |
| masp1 | 0.210 | gng3 | -0.085 |
| msx1b | 0.208 | sncb | -0.082 |
| olig3 | 0.200 | rtn1b | -0.076 |
| fzd10 | 0.192 | stmn1b | -0.076 |
| zic1 | 0.187 | atp6v0cb | -0.072 |
| cdon | 0.187 | vamp2 | -0.072 |
| prss35 | 0.177 | elavl4 | -0.072 |
| mdka | 0.165 | mllt11 | -0.070 |
| msx3 | 0.164 | ywhag2 | -0.070 |
| boc | 0.163 | ywhah | -0.068 |
| zic4 | 0.162 | stx1b | -0.068 |
| gas1a | 0.160 | stmn2a | -0.067 |
| epha2a | 0.160 | gap43 | -0.067 |
| zic2a | 0.157 | zc4h2 | -0.066 |
| slit2 | 0.156 | gpm6ab | -0.066 |
| zic5 | 0.155 | stxbp1a | -0.066 |
| atoh8 | 0.154 | gng2 | -0.066 |
| atoh1a | 0.152 | atp6v1e1b | -0.065 |
| cd82a | 0.151 | dpysl3 | -0.065 |
| cldn5a | 0.150 | tmsb2 | -0.065 |
| notch3 | 0.147 | zgc:65894 | -0.064 |
| pax3a | 0.139 | snap25a | -0.063 |
| rfx4 | 0.138 | gpm6aa | -0.063 |
| plp1a | 0.138 | si:dkeyp-75h12.5 | -0.062 |
| fgfr3 | 0.135 | nsg2 | -0.061 |
| wnt10b | 0.132 | csdc2a | -0.061 |
| axin2 | 0.132 | id4 | -0.061 |
| gas1b | 0.131 | h2afy2 | -0.060 |
| cdh6 | 0.130 | tmem59l | -0.060 |
| XLOC-003690 | 0.128 | fez1 | -0.060 |
| casz1 | 0.126 | map1aa | -0.060 |
| pdgfaa | 0.126 | rtn1a | -0.059 |
| id1 | 0.126 | olfm1b | -0.059 |
| lrrn1 | 0.121 | aplp1 | -0.059 |
| wls | 0.120 | atpv0e2 | -0.059 |