| Positive correlation | Negative correlation | ||
| Gene | r | Gene | r |
| msx1b | 0.367 | gng2 | -0.121 |
| msx3 | 0.364 | gng3 | -0.120 |
| zic1 | 0.351 | stxbp1a | -0.115 |
| zic5 | 0.349 | stx1b | -0.113 |
| zic2a | 0.344 | vamp2 | -0.111 |
| olig3 | 0.312 | tuba1c | -0.110 |
| zic3 | 0.300 | ywhah | -0.110 |
| col4a5 | 0.295 | elavl4 | -0.108 |
| col4a6 | 0.293 | sncb | -0.107 |
| wnt10b | 0.282 | rtn1b | -0.107 |
| atoh8 | 0.278 | jagn1a | -0.105 |
| pdgfaa | 0.275 | cplx2 | -0.104 |
| fzd10 | 0.269 | calm1a | -0.103 |
| adamtsl5 | 0.260 | snap25a | -0.103 |
| mdka | 0.259 | atp6v0cb | -0.103 |
| BX469902.1 | 0.259 | onecut1 | -0.102 |
| cdh6 | 0.258 | syt2a | -0.102 |
| zic2b | 0.256 | si:dkey-276j7.1 | -0.102 |
| zic4 | 0.252 | tmem59l | -0.101 |
| bmp4 | 0.252 | mllt11 | -0.101 |
| prss35 | 0.250 | elavl3 | -0.100 |
| gfap | 0.238 | csdc2a | -0.099 |
| mdkb | 0.237 | tubb5 | -0.098 |
| gas1a | 0.235 | cotl1 | -0.097 |
| igfbp7 | 0.233 | lin28a | -0.097 |
| wls | 0.233 | gap43 | -0.097 |
| pax3a | 0.232 | nsg2 | -0.096 |
| slc1a3a | 0.230 | aplp1 | -0.095 |
| wnt10a | 0.229 | zgc:65894 | -0.095 |
| lrrc39 | 0.223 | map1aa | -0.095 |
| pmp22a | 0.213 | stmn2a | -0.095 |
| atoh1a | 0.209 | thsd7aa | -0.093 |
| zic6 | 0.208 | cplx2l | -0.092 |
| cldn7a | 0.204 | ywhag2 | -0.092 |
| boc | 0.204 | rtn1a | -0.091 |