| Positive correlation | Negative correlation | ||
| Gene | r | Gene | r |
| foxg1a | 0.158 | hoxb9a | -0.077 |
| fezf1 | 0.137 | elavl3 | -0.074 |
| fezf2 | 0.124 | ptmaa | -0.074 |
| vax1 | 0.122 | meis1b | -0.073 |
| slc1a3b | 0.110 | hoxb8a | -0.072 |
| lix1 | 0.108 | hoxc3a | -0.069 |
| foxd2 | 0.103 | hoxb3a | -0.066 |
| foxd1 | 0.100 | myt1b | -0.066 |
| fgfr2 | 0.097 | hoxc9a | -0.062 |
| ppap2d | 0.097 | hoxd3a | -0.061 |
| lrig1 | 0.097 | h3f3d | -0.060 |
| six3a | 0.096 | ptmab | -0.060 |
| twist2 | 0.096 | hoxa9a | -0.057 |
| CR751602.2 | 0.093 | tubb5 | -0.057 |
| id3 | 0.092 | tmeff1b | -0.056 |
| her6 | 0.092 | hoxa3a | -0.056 |
| si:ch211-157b11.8 | 0.091 | vim | -0.056 |
| CABZ01030107.1 | 0.091 | zc4h2 | -0.055 |
| ntrk2a | 0.089 | gng3 | -0.054 |
| fstl1b | 0.088 | stx1b | -0.054 |
| podxl | 0.087 | stxbp1a | -0.053 |
| lhx2b | 0.087 | hoxa9b | -0.052 |
| nkx2.1 | 0.087 | hoxb1b | -0.052 |
| cspg5b | 0.085 | sncb | -0.051 |
| vax2 | 0.085 | elavl4 | -0.051 |
| si:dkey-85k7.7 | 0.084 | hoxd9a | -0.050 |
| angpt1 | 0.083 | myt1a | -0.050 |
| zfp36l2 | 0.083 | onecut1 | -0.050 |
| pon3.2 | 0.082 | si:ch211-57n23.4 | -0.050 |
| igf2b | 0.081 | marcksl1b | -0.049 |
| zgc:165461 | 0.081 | hoxc8a | -0.049 |
| si:ch211-66e2.5 | 0.081 | si:dkey-276j7.1 | -0.049 |
| c1qtnf9 | 0.080 | syt2a | -0.049 |
| timp4.1 | 0.080 | rtn1a | -0.048 |
| efnb1 | 0.079 | hmgn6 | -0.048 |