| Positive correlation | Negative correlation | ||
| Gene | r | Gene | r |
| chrd | 0.431 | fabp3 | -0.139 |
| cdx4 | 0.361 | marcksl1b | -0.135 |
| noto | 0.346 | gpm6aa | -0.126 |
| foxd5 | 0.332 | ckbb | -0.112 |
| nradd | 0.324 | tmsb4x | -0.107 |
| apela | 0.322 | fabp7a | -0.100 |
| pou5f3 | 0.312 | rtn1a | -0.097 |
| sp5l | 0.309 | CU467822.1 | -0.096 |
| fgf8a | 0.305 | pvalb1 | -0.095 |
| nkx1.2la | 0.300 | pvalb2 | -0.094 |
| znfl2a | 0.290 | CR383676.1 | -0.090 |
| hspb1 | 0.287 | tmsb | -0.090 |
| BX005254.3 | 0.246 | nova2 | -0.089 |
| pnx | 0.238 | hbbe1.3 | -0.089 |
| sall4 | 0.219 | actc1b | -0.084 |
| XLOC-042222 | 0.217 | zgc:165461 | -0.084 |
| hoxd10a | 0.208 | CU634008.1 | -0.081 |
| cdx1a | 0.207 | stmn1b | -0.080 |
| mllt3 | 0.201 | gpm6bb | -0.079 |
| asb11 | 0.199 | vim | -0.079 |
| sp9 | 0.196 | COX3 | -0.079 |
| BX001014.2 | 0.194 | elavl3 | -0.078 |
| lamb1a | 0.194 | hbae3 | -0.078 |
| BX927258.1 | 0.193 | atp1a1b | -0.077 |
| her3 | 0.191 | nr2f1a | -0.077 |
| tbxta | 0.190 | slc1a2b | -0.073 |
| greb1 | 0.189 | meis1b | -0.073 |
| npm1a | 0.185 | hbae1.1 | -0.072 |
| hoxb10a | 0.184 | hmgb3a | -0.072 |
| dnase1l4.1 | 0.181 | gpm6ab | -0.071 |
| hoxd12a | 0.179 | si:dkeyp-75h12.5 | -0.071 |
| arid3b | 0.179 | fam168a | -0.071 |
| cpm | 0.178 | si:ch73-21g5.7 | -0.069 |
| cx43.4 | 0.178 | cadm3 | -0.069 |
| prickle1a | 0.173 | mylpfa | -0.069 |