| Positive correlation | Negative correlation | ||
| Gene | r | Gene | r |
| sox3 | 0.326 | tbxta | -0.278 |
| cxcr4b | 0.264 | wnt11f2 | -0.260 |
| inka1a | 0.261 | BX927327.1 | -0.236 |
| id1 | 0.261 | osr1 | -0.233 |
| asb11 | 0.253 | mespab | -0.212 |
| foxd5 | 0.249 | sebox | -0.211 |
| cited4b | 0.243 | cdx4 | -0.205 |
| sox19a | 0.235 | ndr2 | -0.199 |
| si:ch1073-80i24.3 | 0.229 | lhx1a | -0.192 |
| zic2b | 0.228 | wnt5b | -0.189 |
| aldob | 0.215 | aldh1a2 | -0.185 |
| mych | 0.191 | aplnrb | -0.183 |
| glulb | 0.191 | NC-002333.4 | -0.183 |
| shisa2a | 0.185 | lft1 | -0.181 |
| marcksl1b | 0.184 | fgf8a | -0.176 |
| srsf5a | 0.184 | msgn1 | -0.176 |
| si:ch211-152c2.3 | 0.179 | wu:fb97g03 | -0.175 |
| stm | 0.179 | eve1 | -0.170 |
| ddx5 | 0.179 | notum1a | -0.168 |
| sb:cb81 | 0.173 | p4ha2 | -0.168 |
| si:ch211-173m16.2 | 0.172 | FP102169.1 | -0.165 |
| foxd3 | 0.172 | dkk1b | -0.160 |
| ccnd1 | 0.157 | cyp27c1 | -0.160 |
| atp1b1a | 0.157 | hes6 | -0.157 |
| fbxo5 | 0.156 | foxa | -0.150 |
| rbm4.3 | 0.156 | tpbga | -0.146 |
| mplkip | 0.154 | apoc1 | -0.145 |
| nnr | 0.150 | mespaa | -0.145 |
| mex3b | 0.148 | efnb2b | -0.142 |
| ctsla | 0.148 | im:7138239 | -0.132 |
| sox11a | 0.146 | trib3 | -0.130 |
| si:dkey-228b2.6 | 0.145 | tbx16l | -0.128 |
| si:ch73-160h15.3 | 0.145 | fgf3 | -0.127 |
| hnrnpabb | 0.144 | zswim5 | -0.125 |
| gpd1b | 0.143 | sp5a | -0.124 |