| Positive correlation | Negative correlation | ||
| Gene | r | Gene | r |
| lhx9 | 0.463 | vim | -0.109 |
| barhl1b | 0.400 | si:ch73-265d7.2 | -0.096 |
| barhl1a | 0.315 | nr2f6b | -0.078 |
| pitx2 | 0.258 | sp8b | -0.075 |
| LOC100537342 | 0.255 | mdka | -0.073 |
| ralyl | 0.236 | gas1b | -0.072 |
| nrn1a | 0.236 | eef1a1l1 | -0.069 |
| nkx2.4a | 0.205 | col11a1a | -0.066 |
| ebf3a | 0.195 | actb2 | -0.066 |
| nkx2.4b | 0.162 | pax3a | -0.065 |
| wnt8b | 0.161 | cdx4 | -0.065 |
| dvl1b | 0.151 | irx3b | -0.062 |
| dbx1a | 0.146 | col28a2a | -0.062 |
| bcl11aa | 0.143 | nr2f5 | -0.061 |
| BX005003.1 | 0.141 | zgc:56493 | -0.061 |
| lhx2b | 0.138 | sb:cb81 | -0.061 |
| chmp2ba | 0.136 | rpsa | -0.061 |
| zfhx4 | 0.134 | wnt11r | -0.061 |
| sox11b | 0.133 | slc1a3a | -0.060 |
| pitx3 | 0.132 | cd81a | -0.060 |
| adcyap1b | 0.126 | her12 | -0.060 |
| uncx | 0.126 | ssr3 | -0.060 |
| cbfa2t3 | 0.125 | sox3 | -0.059 |
| camkvl | 0.119 | tubb4b | -0.059 |
| sim2 | 0.116 | trim71 | -0.059 |
| scrt1a | 0.113 | CABZ01075068.1 | -0.058 |
| CR361551.1 | 0.113 | nkx6.1 | -0.058 |
| shha | 0.113 | sp8a | -0.058 |
| dbx1b | 0.110 | sparc | -0.058 |
| otx2a | 0.110 | dhrs3b | -0.058 |
| celf2 | 0.110 | gbx1 | -0.057 |
| nanos1 | 0.109 | bicc2 | -0.056 |
| im:7142702 | 0.108 | col4a6 | -0.056 |
| mtus2a | 0.108 | rps2 | -0.056 |
| znf704 | 0.106 | her8a | -0.056 |