| Positive correlation | Negative correlation | ||
| Gene | r | Gene | r |
| lhx9 | 0.401 | hmgb2a | -0.167 |
| barhl1a | 0.346 | pcna | -0.157 |
| nrn1a | 0.281 | id1 | -0.154 |
| lef1 | 0.280 | sox3 | -0.142 |
| barhl1b | 0.276 | npm1a | -0.141 |
| pou4f1 | 0.275 | msna | -0.139 |
| lhx2b | 0.266 | selenoh | -0.137 |
| pou4f2 | 0.239 | banf1 | -0.136 |
| stmn1b | 0.236 | chaf1a | -0.135 |
| adcyap1b | 0.235 | nop58 | -0.132 |
| gpm6ab | 0.226 | anp32b | -0.131 |
| ebf3a | 0.219 | ranbp1 | -0.129 |
| tfap2d | 0.215 | lig1 | -0.129 |
| ctnnbip1 | 0.213 | sox19a | -0.128 |
| ptmaa | 0.205 | rrm1 | -0.128 |
| scrt1b | 0.201 | ccnd1 | -0.126 |
| mab21l1 | 0.200 | dkc1 | -0.125 |
| elavl3 | 0.190 | mki67 | -0.125 |
| fez1 | 0.189 | fbl | -0.124 |
| tuba1c | 0.186 | si:ch73-281n10.2 | -0.124 |
| tcf7l2 | 0.185 | mcm6 | -0.123 |
| rtn1a | 0.184 | snu13b | -0.123 |
| pbx3b | 0.182 | cdca7b | -0.121 |
| zc4h2 | 0.180 | nop56 | -0.121 |
| ebf1a | 0.179 | fen1 | -0.120 |
| gng3 | 0.177 | tuba8l | -0.119 |
| celf2 | 0.176 | dut | -0.119 |
| roraa | 0.175 | nutf2l | -0.118 |
| gpm6aa | 0.172 | cdca7a | -0.118 |
| h2afx1 | 0.172 | akap12b | -0.118 |
| zfhx4 | 0.168 | nasp | -0.118 |
| mllt11 | 0.167 | rpa3 | -0.118 |
| zfhx3 | 0.167 | nop10 | -0.117 |
| hmgb3a | 0.165 | vamp3 | -0.116 |
| ckbb | 0.162 | stmn1a | -0.116 |