| Positive correlation | Negative correlation | ||
| Gene | r | Gene | r |
| msx1b | 0.241 | gpm6aa | -0.116 |
| zic2b | 0.202 | ckbb | -0.088 |
| nradd | 0.190 | gapdhs | -0.086 |
| ednrab | 0.189 | rtn1a | -0.078 |
| XLOC-042222 | 0.155 | gpm6ab | -0.078 |
| sp5l | 0.154 | tmsb | -0.077 |
| cdh6 | 0.153 | rnasekb | -0.076 |
| msx3 | 0.147 | nova2 | -0.076 |
| nid2a | 0.146 | elavl3 | -0.075 |
| cdx4 | 0.143 | gnao1a | -0.074 |
| pax3a | 0.143 | gng3 | -0.070 |
| hspb1 | 0.142 | stmn1b | -0.070 |
| tfec | 0.136 | elavl4 | -0.069 |
| BX927258.1 | 0.136 | sncb | -0.069 |
| BX248318.1 | 0.134 | tuba1c | -0.068 |
| msx2b | 0.133 | gng2 | -0.067 |
| BX001014.2 | 0.133 | vamp2 | -0.065 |
| XLOC-001603 | 0.131 | myt1b | -0.065 |
| lrrc17 | 0.130 | stx1b | -0.064 |
| snai1b | 0.129 | fez1 | -0.064 |
| nog1 | 0.128 | stxbp1a | -0.064 |
| zic2a | 0.128 | pvalb2 | -0.063 |
| wu:fb97g03 | 0.127 | mllt11 | -0.063 |
| apela | 0.126 | slc1a2b | -0.063 |
| fgf8a | 0.125 | si:dkeyp-75h12.5 | -0.062 |
| lamb1a | 0.125 | cotl1 | -0.062 |
| crestin | 0.123 | nsg2 | -0.062 |
| si:ch211-11c3.9 | 0.122 | pvalb1 | -0.062 |
| BX005254.3 | 0.120 | calm1a | -0.061 |
| XLOC-001964 | 0.116 | fabp7a | -0.061 |
| noto | 0.116 | rtn1b | -0.061 |
| zic5 | 0.115 | cplx2 | -0.061 |
| sfrp2 | 0.115 | ywhah | -0.061 |
| slc1a3a | 0.113 | atp6v0cb | -0.061 |
| npm1a | 0.111 | snap25a | -0.061 |