| Positive correlation | Negative correlation | ||
| Gene | r | Gene | r |
| msx1b | 0.496 | gpm6aa | -0.220 |
| msx3 | 0.345 | ckbb | -0.195 |
| pax3a | 0.335 | gapdhs | -0.167 |
| wnt11r | 0.323 | tmsb | -0.152 |
| zic2a | 0.313 | gpm6ab | -0.148 |
| slc1a3a | 0.308 | rtn1a | -0.143 |
| olig3 | 0.297 | CU467822.1 | -0.138 |
| fzd10 | 0.290 | cotl1 | -0.138 |
| col7a1l | 0.284 | rnasekb | -0.134 |
| zic5 | 0.283 | gnao1a | -0.132 |
| pdgfaa | 0.268 | slc1a2b | -0.130 |
| gas1a | 0.268 | pvalb1 | -0.130 |
| zic3 | 0.265 | gng3 | -0.127 |
| sfrp2 | 0.260 | elavl4 | -0.125 |
| gdf10a | 0.256 | pvalb2 | -0.125 |
| nog1 | 0.256 | stmn1b | -0.125 |
| notum1a | 0.250 | si:dkeyp-75h12.5 | -0.124 |
| cdh6 | 0.234 | fez1 | -0.123 |
| stmn1a | 0.226 | fabp7a | -0.120 |
| hmgb2a | 0.220 | atp6v0cb | -0.118 |
| BX248318.1 | 0.220 | sncb | -0.117 |
| hoxc3a | 0.218 | vamp2 | -0.116 |
| msx2b | 0.216 | stx1b | -0.113 |
| nradd | 0.215 | hbbe1.3 | -0.112 |
| tpm4a | 0.206 | acbd7 | -0.111 |
| dut | 0.205 | ywhah | -0.111 |
| boc | 0.205 | hbae3 | -0.111 |
| wnt10b | 0.203 | atp6v1e1b | -0.111 |
| adam8a | 0.202 | ntn1a | -0.110 |
| cdon | 0.199 | dpysl3 | -0.110 |
| si:dkey-102m7.3 | 0.199 | calm1a | -0.110 |
| axin2 | 0.198 | snap25a | -0.110 |
| bmp5 | 0.198 | stxbp1a | -0.110 |
| tpbga | 0.197 | tnrc6c1 | -0.109 |
| pcna | 0.193 | cadm4 | -0.109 |