| Positive correlation | Negative correlation | ||
| Gene | r | Gene | r |
| cdx4 | 0.358 | pitx2 | -0.172 |
| ppp1r14c | 0.305 | zgc:174153 | -0.161 |
| epha2a | 0.284 | matn3a | -0.159 |
| twist2 | 0.276 | klf17 | -0.155 |
| cdx1a | 0.262 | ctslb | -0.153 |
| fadd | 0.262 | si:dkey-239j18.2 | -0.150 |
| p4ha1b | 0.261 | si:dkey-269i1.4 | -0.144 |
| ntd5 | 0.255 | bambia | -0.140 |
| nradd | 0.250 | shisa2a | -0.139 |
| p4ha2 | 0.249 | si:dkey-239j18.3 | -0.136 |
| pmp22b | 0.240 | epcam | -0.133 |
| cdkn1ca | 0.240 | gsc | -0.133 |
| tbxta | 0.237 | fzd8b | -0.133 |
| sp5l | 0.237 | he1.2 | -0.132 |
| epha4a | 0.232 | ucmab | -0.128 |
| cnn3a | 0.232 | krt91 | -0.126 |
| b3gnt7l | 0.231 | frzb | -0.126 |
| foxa2 | 0.230 | ap1s3b | -0.126 |
| serpinh1b | 0.229 | si:ch73-160h15.3 | -0.125 |
| hmgn6 | 0.228 | he1.1 | -0.122 |
| pak1 | 0.227 | otx2a | -0.121 |
| emilin3a | 0.226 | crip1 | -0.120 |
| igf2bp1 | 0.224 | si:ch211-243g18.2 | -0.120 |
| plp2 | 0.223 | elovl6 | -0.120 |
| qkia | 0.222 | prdm1a | -0.119 |
| rgma | 0.220 | epyc | -0.118 |
| serinc5 | 0.216 | wu:fa26c03 | -0.118 |
| wnt5b | 0.215 | icn | -0.118 |
| soga1 | 0.214 | stard10 | -0.117 |
| lypd6b | 0.214 | si:dkey-26g8.5 | -0.117 |
| rcn3 | 0.212 | chad | -0.117 |
| noto | 0.211 | arfgap3 | -0.117 |
| hoxc3a | 0.211 | si:ch211-163l21.8 | -0.116 |
| dhrs3b | 0.210 | mctp2b | -0.116 |
| nid2a | 0.207 | si:dkey-1j5.4 | -0.116 |