Gene expression UMAP
Other cell groups
all cells |
blastomeres |
PGCs |
endoderm |
axial mesoderm |
muscle  |
mural cells / non-skeletal muscle  |
mesenchyme  |
hematopoietic / vasculature  |
pronephros  |
neural |
spinal cord / glia |
eye |
taste / olfactory |
otic / lateral line |
epidermis |
periderm |
fin |
ionocytes / mucous |
pigment cells |
Expression by stage/cluster
Correlated gene expression
| Positive correlation | Negative correlation | ||
| Gene | r | Gene | r |
| tfap2d | 0.217 | id1 | -0.035 |
| lef1 | 0.087 | pcna | -0.033 |
| lhx9 | 0.087 | npm1a | -0.031 |
| pou4f1 | 0.078 | sox3 | -0.029 |
| shox | 0.073 | ccnd1 | -0.028 |
| bhlhe23 | 0.070 | nop58 | -0.028 |
| barhl2 | 0.067 | selenoh | -0.028 |
| lhx2b | 0.065 | hmgb2a | -0.028 |
| tcf7l2 | 0.064 | anp32b | -0.027 |
| mab21l1 | 0.062 | fen1 | -0.027 |
| pou4f2 | 0.061 | mcm6 | -0.027 |
| lmo3 | 0.059 | dkc1 | -0.027 |
| ctnnbip1 | 0.058 | snu13b | -0.026 |
| barhl1a | 0.057 | cdca7b | -0.026 |
| ebf3a | 0.056 | si:ch73-281n10.2 | -0.026 |
| pou3f1 | 0.053 | chaf1a | -0.026 |
| ebf1a | 0.051 | nop56 | -0.026 |
| nrn1a | 0.050 | nasp | -0.026 |
| stmn1b | 0.047 | ranbp1 | -0.025 |
| fez1 | 0.047 | vamp3 | -0.025 |
| rgmb | 0.046 | banf1 | -0.025 |
| islr2 | 0.045 | mcm7 | -0.025 |
| CT030048.1 | 0.045 | lig1 | -0.025 |
| tfap2e | 0.045 | mcm3 | -0.025 |
| tfap2b | 0.044 | cdca7a | -0.025 |
| gpm6ab | 0.043 | nop10 | -0.025 |
| rtn1a | 0.043 | fbl | -0.025 |
| col8a1b | 0.043 | akap12b | -0.025 |
| mllt11 | 0.042 | rrm1 | -0.025 |
| tuba1c | 0.041 | mcm2 | -0.025 |
| elavl3 | 0.041 | sdc4 | -0.025 |
| si:ch211-248l17.3 | 0.041 | mcm4 | -0.024 |
| tubb5 | 0.040 | aldob | -0.024 |
| cbfa2t3 | 0.040 | mcm5 | -0.024 |
| shox2 | 0.039 | hells | -0.024 |