Gene expression UMAP
Other cell groups
all cells |
blastomeres |
PGCs |
endoderm |
axial mesoderm |
muscle  |
mural cells / non-skeletal muscle  |
mesenchyme  |
hematopoietic / vasculature  |
pronephros  |
neural |
spinal cord / glia |
eye |
taste / olfactory |
otic / lateral line |
epidermis |
periderm |
fin |
ionocytes / mucous |
pigment cells |
Expression by stage/cluster
Correlated gene expression
| Positive correlation | Negative correlation | ||
| Gene | r | Gene | r |
| si:dkey-117a8.1 | 0.185 | sox3 | -0.120 |
| LOC100000278 | 0.180 | id1 | -0.110 |
| msgn1 | 0.177 | cxcr4b | -0.087 |
| lhx1a | 0.168 | sox19a | -0.075 |
| rspo4 | 0.161 | cited4b | -0.074 |
| zic2a | 0.158 | inka1a | -0.069 |
| FP102169.1 | 0.156 | asb11 | -0.065 |
| si:dkey-22h13.5 | 0.153 | si:ch1073-80i24.3 | -0.060 |
| gata6 | 0.153 | zic2b | -0.052 |
| ism1 | 0.151 | mkrn4 | -0.051 |
| dkk1b | 0.150 | foxh1 | -0.050 |
| sp5a | 0.149 | mych | -0.049 |
| gata5 | 0.147 | sb:cb81 | -0.049 |
| lmo1 | 0.141 | cxcr4a | -0.048 |
| fgf3 | 0.141 | foxd5 | -0.045 |
| pitx2 | 0.140 | si:ch211-170d8.2 | -0.045 |
| efnb2b | 0.135 | nnr | -0.044 |
| mespab | 0.134 | pprc1 | -0.043 |
| BX085193.2 | 0.131 | LOC101885477 | -0.042 |
| lft2 | 0.130 | stk35l | -0.042 |
| kirrel3l | 0.128 | snai2 | -0.042 |
| XLOC-034181 | 0.127 | tubb4b | -0.040 |
| wnt11f2 | 0.126 | h1m | -0.040 |
| CR759845.3 | 0.124 | shisa2a | -0.039 |
| foxa | 0.123 | hirip3 | -0.039 |
| BX927327.1 | 0.122 | blf | -0.039 |
| tbxta | 0.121 | nsd2 | -0.039 |
| rho | 0.120 | tsc22d2 | -0.039 |
| mespaa | 0.120 | rbm7 | -0.038 |
| dusp4 | 0.120 | zgc:64022 | -0.038 |
| LOC110438013 | 0.120 | c1d | -0.037 |
| XLOC-014827 | 0.120 | glulb | -0.036 |
| si:dkey-77g12.4 | 0.119 | fkbp2 | -0.036 |
| elovl6 | 0.118 | ccna1 | -0.036 |
| cpn1 | 0.118 | rybpa | -0.036 |