| Positive correlation | Negative correlation | ||
| Gene | r | Gene | r |
| tbxta | 0.528 | sox3 | -0.331 |
| wnt11f2 | 0.456 | cited4b | -0.261 |
| BX927327.1 | 0.422 | cxcr4b | -0.225 |
| cdx4 | 0.404 | inka1a | -0.212 |
| eve1 | 0.395 | shisa2a | -0.210 |
| sebox | 0.387 | sox19a | -0.207 |
| mespab | 0.387 | cxcr4a | -0.189 |
| hes6 | 0.379 | asb11 | -0.165 |
| tpbga | 0.363 | id1 | -0.159 |
| ndr2 | 0.357 | zic2b | -0.145 |
| aldh1a2 | 0.335 | si:ch211-173m16.2 | -0.140 |
| osr1 | 0.328 | stk35l | -0.139 |
| lhx1a | 0.324 | foxd5 | -0.139 |
| p4ha2 | 0.316 | blf | -0.138 |
| wu:fb97g03 | 0.311 | glulb | -0.134 |
| msgn1 | 0.306 | nanog | -0.131 |
| FP102169.1 | 0.301 | zgc:100951 | -0.129 |
| notum1a | 0.282 | si:ch211-170d8.2 | -0.128 |
| fgf8a | 0.277 | mkrn4 | -0.126 |
| im:7138239 | 0.275 | si:ch1073-80i24.3 | -0.125 |
| cyp27c1 | 0.275 | zgc:64022 | -0.123 |
| tbx16 | 0.274 | sfrp1a | -0.122 |
| dkk1b | 0.274 | gpd1b | -0.122 |
| sp5a | 0.274 | foxh1 | -0.119 |
| fscn1a | 0.269 | ccna1 | -0.116 |
| zswim5 | 0.267 | lfng | -0.115 |
| lft1 | 0.267 | zgc:113424 | -0.114 |
| efnb2b | 0.264 | cdca7a | -0.112 |
| zic2a | 0.260 | si:dkey-11o15.10 | -0.111 |
| apoc1 | 0.253 | spink2.1 | -0.108 |
| gata5 | 0.243 | pkdccb | -0.108 |
| mespaa | 0.243 | cldnd | -0.108 |
| flrt3 | 0.238 | acp5a | -0.108 |
| aplnrb | 0.236 | LOC101885477 | -0.107 |
| tbx16l | 0.233 | rbm7 | -0.107 |