| Positive correlation | Negative correlation | ||
| Gene | r | Gene | r |
| rspo2 | 0.124 | sncb | -0.049 |
| cdon | 0.114 | gng3 | -0.047 |
| fzd10 | 0.109 | elavl4 | -0.047 |
| wnt1 | 0.102 | stmn2a | -0.045 |
| msx1b | 0.100 | gpm6ab | -0.043 |
| wls | 0.095 | rtn1b | -0.043 |
| wnt8b | 0.086 | ywhag2 | -0.042 |
| mdka | 0.085 | atp6v0cb | -0.040 |
| si:ch211-66e2.5 | 0.084 | ckbb | -0.040 |
| wnt10b | 0.084 | snap25a | -0.040 |
| tpbga | 0.084 | zgc:65894 | -0.039 |
| axin2 | 0.082 | stx1b | -0.039 |
| gdf10a | 0.079 | calm2a | -0.038 |
| zic1 | 0.079 | stxbp1a | -0.038 |
| rspo3 | 0.077 | stmn1b | -0.038 |
| msx3 | 0.077 | gapdhs | -0.037 |
| si:ch211-69b22.5 | 0.076 | nsg2 | -0.037 |
| zic5 | 0.076 | map1aa | -0.037 |
| olig3 | 0.074 | olfm1b | -0.037 |
| wnt3a | 0.074 | tmem59l | -0.036 |
| zic4 | 0.074 | gap43 | -0.036 |
| zic2a | 0.073 | tmsb2 | -0.036 |
| zic6 | 0.070 | sv2a | -0.036 |
| bmper | 0.068 | vamp2 | -0.036 |
| lmx1a | 0.067 | gng2 | -0.035 |
| fabp7b | 0.067 | rtn1a | -0.034 |
| col15a1b | 0.067 | zc4h2 | -0.034 |
| fabp11a | 0.067 | atp6v1e1b | -0.034 |
| ldlrad2 | 0.066 | aplp1 | -0.034 |
| rspo1 | 0.065 | nova1 | -0.034 |
| boc | 0.065 | id4 | -0.034 |
| pax3a | 0.065 | atp6v1g1 | -0.034 |
| si:dkey-34d22.1 | 0.065 | maptb | -0.033 |
| cldn5a | 0.064 | sypb | -0.033 |
| tnfrsf19 | 0.064 | si:dkeyp-75h12.5 | -0.033 |