| Positive correlation | Negative correlation | ||
| Gene | r | Gene | r |
| lmx1a | 0.356 | tuba1c | -0.067 |
| wnt1 | 0.307 | rtn1a | -0.064 |
| msx1b | 0.293 | sox19a | -0.062 |
| gdf10a | 0.282 | cotl1 | -0.061 |
| adamtsl5 | 0.268 | sp8b | -0.055 |
| rspo3 | 0.259 | gng2 | -0.055 |
| bmp6 | 0.252 | si:dkey-276j7.1 | -0.055 |
| msx3 | 0.251 | tmeff1b | -0.054 |
| bmp5 | 0.250 | ywhah | -0.054 |
| BX469902.1 | 0.248 | gng3 | -0.054 |
| zic5 | 0.239 | elavl3 | -0.053 |
| zic2a | 0.237 | nova1 | -0.053 |
| col12a1a | 0.222 | stxbp1a | -0.053 |
| cdon | 0.221 | tmsb | -0.053 |
| cdh6 | 0.216 | stx1b | -0.052 |
| bmp4 | 0.214 | myt1b | -0.051 |
| rspo2 | 0.214 | sncb | -0.051 |
| wnt10a | 0.211 | syt2a | -0.051 |
| gdf7 | 0.209 | elavl4 | -0.050 |
| zic2b | 0.203 | ntn1a | -0.049 |
| atoh1b | 0.201 | rtn1b | -0.049 |
| pmp22a | 0.199 | cplx2 | -0.049 |
| wls | 0.198 | ube2d4 | -0.048 |
| clybl | 0.196 | snap25a | -0.048 |
| col7a1l | 0.195 | id4 | -0.048 |
| ezra | 0.192 | vamp2 | -0.047 |
| atoh8 | 0.192 | calm1a | -0.046 |
| atoh1a | 0.191 | hmgb3a | -0.046 |
| crabp2a | 0.189 | csdc2a | -0.046 |
| ackr3b | 0.177 | nes | -0.046 |
| zic1 | 0.173 | gapdhs | -0.045 |
| fzd10 | 0.172 | gap43 | -0.045 |
| gdpd5a | 0.172 | nova2 | -0.045 |
| hhla2a.1 | 0.169 | slc1a2b | -0.045 |
| fabp11a | 0.167 | mllt11 | -0.044 |