| Positive correlation | Negative correlation | ||
| Gene | r | Gene | r |
| wnt1 | 0.360 | sncb | -0.071 |
| atoh1b | 0.342 | gng3 | -0.070 |
| atoh1a | 0.324 | gapdhs | -0.068 |
| msx1b | 0.268 | gpm6ab | -0.067 |
| atoh8 | 0.248 | rtn1b | -0.067 |
| olig4 | 0.209 | elavl4 | -0.065 |
| olig3 | 0.205 | ckbb | -0.065 |
| bmp5 | 0.200 | ywhag2 | -0.062 |
| fibinb | 0.188 | stx1b | -0.061 |
| lmx1a | 0.185 | stmn2a | -0.061 |
| cdon | 0.177 | ywhah | -0.061 |
| wls | 0.166 | atp6v0cb | -0.060 |
| msx3 | 0.165 | vamp2 | -0.060 |
| rspo2 | 0.163 | calm2a | -0.059 |
| rspo3 | 0.162 | stxbp1a | -0.056 |
| cdh6 | 0.154 | zgc:65894 | -0.056 |
| sost | 0.144 | gap43 | -0.056 |
| nog2 | 0.144 | id4 | -0.056 |
| cldn5a | 0.142 | snap25a | -0.055 |
| im:7152348 | 0.139 | tmsb2 | -0.055 |
| nkd1 | 0.136 | nova1 | -0.054 |
| fabp7b | 0.133 | fez1 | -0.054 |
| gdf10a | 0.132 | gpm6aa | -0.054 |
| igfbp7 | 0.121 | mllt11 | -0.053 |
| msx2b | 0.121 | nsg2 | -0.053 |
| epha2a | 0.113 | tmem59l | -0.053 |
| fstl1a | 0.111 | map1aa | -0.052 |
| id1 | 0.111 | atp6v1e1b | -0.052 |
| nr2f6b | 0.110 | si:dkeyp-75h12.5 | -0.051 |
| zgc:114181 | 0.110 | atp1a3a | -0.051 |
| wnt3a | 0.109 | dpysl3 | -0.051 |
| col15a1b | 0.108 | maptb | -0.051 |
| LOC798783 | 0.108 | csdc2a | -0.050 |
| gdf6a | 0.107 | tmsb | -0.050 |
| cep131 | 0.107 | atpv0e2 | -0.050 |