| Positive correlation | Negative correlation | ||
| Gene | r | Gene | r |
| cd82a | 0.159 | hoxc3a | -0.117 |
| fabp7a | 0.158 | hoxb9a | -0.105 |
| si:ch73-335m24.2 | 0.157 | hoxb3a | -0.099 |
| zgc:165461 | 0.149 | myt1b | -0.094 |
| c7b | 0.138 | hoxa9a | -0.092 |
| lmo7a | 0.137 | tmeff1b | -0.092 |
| qki2 | 0.136 | hoxd3a | -0.092 |
| zgc:101100 | 0.131 | elavl3 | -0.092 |
| cd226 | 0.131 | onecut1 | -0.090 |
| ugt8 | 0.126 | meis1b | -0.088 |
| CU467822.1 | 0.126 | hoxc8a | -0.086 |
| CABZ01059119.1 | 0.122 | hoxb1b | -0.084 |
| celf2 | 0.121 | meis2b | -0.082 |
| timd4 | 0.121 | hoxb8a | -0.081 |
| myrf | 0.120 | syt2a | -0.081 |
| gpm6bb | 0.119 | lin28a | -0.081 |
| klf6a | 0.118 | h3f3d | -0.080 |
| CR751602.2 | 0.114 | hoxb10a | -0.080 |
| ptch2 | 0.114 | onecut2 | -0.078 |
| fa2h | 0.114 | cdx4 | -0.078 |
| atp1a1b | 0.114 | snap25a | -0.078 |
| zwi | 0.113 | tp53inp2 | -0.077 |
| nkx2.2a | 0.112 | hoxa3a | -0.076 |
| cdhr5a | 0.111 | LOC100537384 | -0.076 |
| cldnk | 0.111 | stxbp1a | -0.075 |
| mag | 0.110 | nhlh2 | -0.074 |
| smoc2 | 0.108 | stx1b | -0.073 |
| ppap2d | 0.108 | CABZ01075068.1 | -0.073 |
| itm2ba | 0.107 | jagn1a | -0.073 |
| fgfr2 | 0.107 | hoxa10b | -0.071 |
| olig2 | 0.107 | cplx2l | -0.070 |
| slc1a2b | 0.105 | nsg2 | -0.070 |
| si:dkey-204f11.64 | 0.105 | znf503 | -0.069 |
| elovl7a | 0.105 | zgc:100920 | -0.069 |
| otx2b | 0.104 | dlb | -0.069 |