| Positive correlation | Negative correlation | ||
| Gene | r | Gene | r |
| AL954322.2 | 0.341 | cnmd | -0.141 |
| tbx2a | 0.238 | col2a1a | -0.119 |
| tbx3a | 0.172 | col9a3 | -0.117 |
| prrx1b | 0.132 | col9a2 | -0.115 |
| cdon | 0.122 | col9a1a | -0.109 |
| msx3 | 0.121 | fgfbp2b | -0.103 |
| bambia | 0.114 | matn4 | -0.091 |
| fam69c | 0.111 | foxc1b | -0.089 |
| alx4a | 0.109 | epyc | -0.086 |
| rhag | 0.107 | otos | -0.086 |
| msx1b | 0.101 | ucmab | -0.084 |
| gata2a | 0.100 | cthrc1a | -0.083 |
| zfhx4 | 0.100 | tgfbi | -0.081 |
| aqp3b | 0.097 | col11a2 | -0.081 |
| bambib | 0.092 | col11a1a | -0.079 |
| shox | 0.091 | serpinf1 | -0.076 |
| dlx5a | 0.091 | pdcd6 | -0.073 |
| dkk1a | 0.090 | foxp4 | -0.073 |
| msx2b | 0.090 | mia | -0.073 |
| sgms2a | 0.090 | vwde | -0.072 |
| tkta | 0.089 | wfdc2 | -0.072 |
| tfap2b | 0.087 | nkx3.2 | -0.071 |
| tmeff2a | 0.086 | si:dkey-6n6.1 | -0.071 |
| spred2b | 0.086 | snorc | -0.071 |
| ahcy | 0.086 | matn1 | -0.071 |
| wnt9b | 0.084 | col2a1b | -0.069 |
| smad9 | 0.083 | acana | -0.069 |
| rgs5a | 0.083 | AL929222.2 | -0.066 |
| lmo4b | 0.083 | sox9a | -0.065 |
| qdpra | 0.082 | VIT | -0.065 |
| mpped2 | 0.081 | wisp3 | -0.064 |
| hsp90ab1 | 0.081 | tbx15 | -0.064 |
| XLOC-034214 | 0.079 | zgc:162612 | -0.063 |
| hand2 | 0.079 | col8a2 | -0.062 |
| si:ch211-207d6.2 | 0.079 | cd63 | -0.062 |