| Positive correlation | Negative correlation | ||
| Gene | r | Gene | r |
| vsx2 | 0.447 | id1 | -0.100 |
| shox2 | 0.328 | XLOC-003690 | -0.100 |
| nrn1a | 0.245 | cldn5a | -0.093 |
| gjd2b | 0.230 | mdka | -0.092 |
| LHX3 | 0.224 | btg2 | -0.089 |
| asic4a | 0.221 | notch3 | -0.084 |
| nrn1la | 0.209 | tspan7 | -0.084 |
| si:ch211-237l4.6 | 0.206 | sdc4 | -0.080 |
| nell2b | 0.203 | XLOC-003689 | -0.080 |
| lhx4 | 0.192 | sox3 | -0.078 |
| bhlhe22 | 0.189 | vamp3 | -0.076 |
| mafaa | 0.178 | sparc | -0.074 |
| gsg1l2b | 0.172 | msi1 | -0.074 |
| elavl4 | 0.169 | COX7A2 (1 of many) | -0.074 |
| slc17a6b | 0.167 | fosab | -0.073 |
| chrnb4 | 0.166 | gfap | -0.072 |
| islr2 | 0.166 | her4.1 | -0.071 |
| trhra | 0.161 | her12 | -0.071 |
| LOC103910008 | 0.157 | sb:cb81 | -0.071 |
| gng3 | 0.151 | sox19a | -0.070 |
| cxxc4 | 0.150 | XLOC-003692 | -0.067 |
| snap25a | 0.150 | msna | -0.066 |
| kif26ab | 0.146 | pgrmc1 | -0.066 |
| sncb | 0.143 | her4.2 | -0.065 |
| slc17a6a | 0.140 | her15.1 | -0.065 |
| gap43 | 0.140 | gpm6bb | -0.064 |
| stx1b | 0.138 | cd82a | -0.063 |
| nr5a2 | 0.137 | hmgb2a | -0.062 |
| rbfox3a | 0.137 | selenoh | -0.062 |
| jagn1a | 0.136 | tuba8l | -0.062 |
| ywhag2 | 0.136 | her2 | -0.061 |
| stxbp1a | 0.135 | pcna | -0.060 |
| strbp | 0.134 | abhd6a | -0.060 |
| atp6v0cb | 0.133 | gas1b | -0.059 |
| robo2 | 0.133 | si:ch73-265d7.2 | -0.059 |