| Positive correlation | Negative correlation | ||
| Gene | r | Gene | r |
| blf | 0.174 | tbxta | -0.175 |
| nanog | 0.164 | wnt11f2 | -0.141 |
| cited4b | 0.164 | cdx4 | -0.138 |
| si:ch211-173m16.2 | 0.156 | eve1 | -0.131 |
| inka1a | 0.143 | hes6 | -0.119 |
| sox3 | 0.143 | BX927327.1 | -0.116 |
| mkrn4 | 0.142 | sebox | -0.113 |
| cdca7a | 0.129 | wu:fb97g03 | -0.111 |
| cldnd | 0.128 | osr1 | -0.107 |
| zgc:100951 | 0.127 | mespab | -0.107 |
| mex3b | 0.125 | rasgef1ba | -0.107 |
| glulb | 0.125 | tpbga | -0.107 |
| asb11 | 0.125 | notum1a | -0.105 |
| zgc:64022 | 0.124 | lhx1a | -0.104 |
| gtf2a1 | 0.120 | wnt5b | -0.102 |
| epcam | 0.119 | ybx1 | -0.102 |
| cxcr4a | 0.119 | efnb2b | -0.102 |
| gpatch4 | 0.116 | sp5a | -0.101 |
| exd2 | 0.116 | msgn1 | -0.100 |
| spink2.1 | 0.116 | zswim5 | -0.098 |
| rbm7 | 0.113 | gata5 | -0.097 |
| si:ch73-299h12.3 | 0.113 | im:7138239 | -0.096 |
| oclna | 0.111 | ndr2 | -0.096 |
| si:ch211-214j24.10 | 0.110 | p4ha2 | -0.093 |
| ccna1 | 0.110 | dkk1b | -0.091 |
| dnajb1b | 0.109 | cyp27c1 | -0.091 |
| si:dkey-68o6.5 | 0.109 | NC-002333.4 | -0.090 |
| stk35l | 0.109 | fgf8a | -0.089 |
| si:dkey-11o15.10 | 0.108 | pitx2 | -0.089 |
| LOC101885477 | 0.107 | zic2a | -0.088 |
| npc2 | 0.106 | fscn1a | -0.087 |
| vgll4l | 0.106 | aldh1a2 | -0.087 |
| rpa3 | 0.105 | FP102169.1 | -0.085 |
| abhd10b | 0.105 | si:dkeyp-2e4.3 | -0.085 |
| pho | 0.105 | eef1a1l1 | -0.084 |