| Positive correlation | Negative correlation | ||
| Gene | r | Gene | r |
| noto | 0.334 | krt8 | -0.249 |
| cdx4 | 0.323 | krt18a.1 | -0.224 |
| epha2a | 0.314 | zgc:174153 | -0.187 |
| epha4a | 0.288 | icn | -0.187 |
| wnt5b | 0.284 | ctslb | -0.180 |
| wnt11f2 | 0.277 | si:ch73-23l24.1 | -0.174 |
| cx43.4 | 0.274 | klf17 | -0.174 |
| fgf8a | 0.274 | si:dkey-239j18.2 | -0.174 |
| sp5l | 0.274 | pitx2 | -0.170 |
| tbxta | 0.271 | si:dkey-269i1.4 | -0.170 |
| hes6 | 0.269 | zgc:113232 | -0.164 |
| etv4 | 0.261 | cd63 | -0.162 |
| foxa2 | 0.261 | krt4 | -0.160 |
| hspb1 | 0.252 | si:dkey-239j18.3 | -0.154 |
| twist2 | 0.252 | si:dkey-151g10.6 | -0.152 |
| bzw1b | 0.242 | he1.2 | -0.151 |
| hoxc3a | 0.239 | pleca | -0.149 |
| tmem119b | 0.238 | fzd8b | -0.146 |
| hjv | 0.237 | col11a2 | -0.142 |
| nradd | 0.235 | col9a1b | -0.139 |
| admp | 0.234 | rplp1 | -0.139 |
| emid1 | 0.232 | he1.1 | -0.139 |
| cdkn1ca | 0.230 | rps29 | -0.138 |
| rgma | 0.229 | si:dkey-269i1.3 | -0.138 |
| b3gnt7l | 0.228 | col9a2 | -0.136 |
| ddx39ab | 0.225 | zgc:92380 | -0.135 |
| si:ch211-27e6.1 | 0.225 | zmp:0000000760 | -0.134 |
| fn1a | 0.223 | si:dkey-248g15.3 | -0.134 |
| fibinb | 0.221 | wu:fa26c03 | -0.133 |
| angptl6 | 0.218 | prdm1a | -0.133 |
| fgf4 | 0.215 | cldnh | -0.133 |
| h2afva | 0.215 | svopl | -0.133 |
| pmp22b | 0.214 | si:dkey-26g8.5 | -0.133 |
| foxa | 0.214 | timp4.1 | -0.132 |
| emilin3a | 0.214 | LOC108180223 | -0.131 |