| Positive correlation | Negative correlation | ||
| Gene | r | Gene | r |
| pitx3 | 0.194 | si:ch211-222l21.1 | -0.061 |
| scinla | 0.191 | hmga1a | -0.058 |
| gyg1b | 0.174 | tubb2b | -0.056 |
| si:dkey-164f24.2 | 0.174 | rplp2l | -0.053 |
| tkta | 0.163 | hmgb2b | -0.050 |
| lrrc58a | 0.160 | marcksb | -0.049 |
| pitx2 | 0.160 | snrpf | -0.048 |
| pitx1 | 0.159 | snrpe | -0.048 |
| fhl2a | 0.154 | snrpd2 | -0.045 |
| wnt9b | 0.152 | h2afvb | -0.044 |
| tubb6 | 0.148 | hmgb2a | -0.044 |
| acta2 | 0.146 | snrpd1 | -0.044 |
| mgarp | 0.137 | fabp3 | -0.043 |
| gpc1a | 0.135 | mycn | -0.043 |
| timp4.1 | 0.134 | hapln1a | -0.042 |
| fgl2a | 0.133 | ddx39ab | -0.042 |
| myl9a | 0.132 | si:dkey-151g10.6 | -0.042 |
| lmod1b | 0.131 | snrpg | -0.042 |
| lmx1ba | 0.129 | rbbp4 | -0.042 |
| csrp2 | 0.129 | tuba8l3 | -0.042 |
| atp1b1a | 0.127 | ptges3b | -0.041 |
| aqp3a | 0.125 | alyref | -0.041 |
| spock3 | 0.125 | nucks1a | -0.041 |
| slc43a3b | 0.124 | dut | -0.041 |
| gbe1a | 0.121 | dlx2a | -0.041 |
| alpl | 0.117 | nono | -0.041 |
| lmx1bb | 0.117 | hnrnpaba | -0.040 |
| ccka | 0.116 | paics | -0.040 |
| fmoda | 0.114 | h3f3a | -0.040 |
| bves | 0.114 | hmgn2 | -0.040 |
| myh11a | 0.113 | ilf2 | -0.039 |
| thrap3a | 0.112 | snrpb | -0.039 |
| qdpra | 0.112 | magoh | -0.039 |
| fstl3 | 0.111 | cd2bp2 | -0.039 |
| cnn1b | 0.111 | snu13b | -0.039 |