| Positive correlation | Negative correlation | ||
| Gene | r | Gene | r |
| tbxta | 0.441 | sox3 | -0.300 |
| wnt11f2 | 0.378 | cited4b | -0.214 |
| aldh1a2 | 0.358 | cxcr4b | -0.200 |
| BX927327.1 | 0.349 | id1 | -0.186 |
| mespab | 0.347 | sox19a | -0.185 |
| osr1 | 0.327 | inka1a | -0.178 |
| lhx1a | 0.317 | cxcr4a | -0.168 |
| wnt5b | 0.316 | shisa2a | -0.165 |
| im:7138239 | 0.312 | asb11 | -0.141 |
| msgn1 | 0.312 | zic2b | -0.141 |
| FP102169.1 | 0.306 | blf | -0.138 |
| ndr2 | 0.305 | glulb | -0.134 |
| zswim5 | 0.305 | nanog | -0.131 |
| tbx16l | 0.293 | zgc:100951 | -0.130 |
| hes6 | 0.292 | stk35l | -0.129 |
| tpbga | 0.290 | foxh1 | -0.119 |
| sebox | 0.285 | si:ch1073-80i24.3 | -0.119 |
| cdx4 | 0.285 | si:ch211-173m16.2 | -0.116 |
| efnb2b | 0.282 | mkrn4 | -0.106 |
| wu:fb97g03 | 0.282 | mex3b | -0.103 |
| notum1a | 0.279 | lfng | -0.103 |
| fscn1a | 0.275 | acp5a | -0.102 |
| cyp27c1 | 0.273 | zgc:173742 | -0.102 |
| eve1 | 0.266 | si:ch211-170d8.2 | -0.100 |
| zic2a | 0.254 | foxd5 | -0.099 |
| sp5a | 0.247 | si:dkey-11o15.10 | -0.099 |
| mespaa | 0.243 | ccna1 | -0.099 |
| aplnrb | 0.242 | h1m | -0.099 |
| flrt3 | 0.240 | zgc:64022 | -0.098 |
| lft1 | 0.230 | sb:cb81 | -0.098 |
| efnb2a | 0.228 | wee2 | -0.098 |
| foxa | 0.224 | LOC101885477 | -0.098 |
| tbx16 | 0.224 | dnajb1b | -0.097 |
| dkk1b | 0.220 | sfrp1a | -0.096 |
| kirrel3l | 0.219 | rcor1 | -0.096 |