notochord granular surface
ZFIN 
Gene expression UMAP
Other cell groups
all cells |
blastomeres |
PGCs |
endoderm |
axial mesoderm |
muscle  |
mural cells / non-skeletal muscle  |
mesenchyme  |
hematopoietic / vasculature  |
pronephros  |
neural |
spinal cord / glia |
eye |
taste / olfactory |
otic / lateral line |
epidermis |
periderm |
fin |
ionocytes / mucous |
pigment cells |
Expression by stage/cluster
Correlated gene expression
| Positive correlation | Negative correlation | ||
| Gene | r | Gene | r |
| vimr1 | 0.863 | ptmab | -0.142 |
| CU681836.1 | 0.837 | xbp1 | -0.111 |
| ezra | 0.801 | aldob | -0.105 |
| LOC108179220 | 0.787 | anp32b | -0.103 |
| si:dkey-202g17.3 | 0.724 | si:ch73-281n10.2 | -0.102 |
| zgc:91999 | 0.719 | h2afvb | -0.100 |
| prx | 0.713 | hnrnpabb | -0.097 |
| si:ch211-266k8.6 | 0.621 | ncl | -0.097 |
| si:dkeyp-118a3.2 | 0.580 | snrpb | -0.095 |
| cx43 | 0.561 | dkc1 | -0.094 |
| cav3 | 0.547 | npm1a | -0.093 |
| syngr3b | 0.543 | nucks1a | -0.093 |
| ehd3 | 0.528 | hnrnpaba | -0.093 |
| hspb11 | 0.521 | hspb1 | -0.091 |
| svila | 0.505 | nop58 | -0.089 |
| pacsin3 | 0.502 | snu13b | -0.089 |
| vimr2 | 0.497 | hmga1a | -0.088 |
| tmem182a | 0.468 | fbl | -0.087 |
| cavin1b | 0.464 | cbx3a | -0.087 |
| bag2 | 0.448 | setb | -0.086 |
| kcnj8 | 0.444 | ran | -0.086 |
| si:ch211-1a19.3 | 0.432 | ube2e1 | -0.085 |
| adgrd1 | 0.431 | anp32e | -0.084 |
| tspan7b | 0.428 | cirbpb | -0.084 |
| slc36a1 | 0.423 | rsl1d1 | -0.084 |
| slc7a6 | 0.421 | si:ch211-288g17.3 | -0.083 |
| si:ch211-117c9.2 | 0.418 | marcksb | -0.083 |
| rap1gap2b | 0.417 | ddx18 | -0.082 |
| tmod4 | 0.412 | hmgb2b | -0.082 |
| hs1bp3 | 0.396 | hnrnpa1a | -0.082 |
| lyst | 0.378 | nop56 | -0.082 |
| SLC15A5 | 0.375 | mki67 | -0.082 |
| rpz5 | 0.373 | sec61b | -0.082 |
| synm | 0.357 | si:dkey-42i9.4 | -0.081 |
| sncga | 0.355 | hnrnpa1b | -0.081 |