ngs (mesenchyme): Daniocell

Daniocell

ngs (mesenchyme)

notochord granular surface ZFIN

Gene expression UMAP

Download UMAP

Other cell groups

all cells	blastomeres	PGCs	endoderm	axial mesoderm
muscle	mural cells / non-skeletal muscle	mesenchyme	hematopoietic / vasculature	pronephros
neural	spinal cord / glia	eye	taste / olfactory	otic / lateral line
epidermis	periderm	fin	ionocytes / mucous	pigment cells

Expression by stage/cluster

Correlated gene expression

Positive correlation		Negative correlation
Gene	r	Gene	r
pimr185	0.165	hsbp1b	-0.015
vimr1	0.146	tmsb4x	-0.012
cntd1	0.109	kras	-0.012
CU019562.2	0.097	dbi	-0.011
XLOC-043548	0.096	mt-nd3	-0.011
ltc4s	0.092	tmem214	-0.010
LOC100000545	0.084	si:ch73-1a9.3	-0.010
znf1034	0.084	ndufaf3	-0.010
XLOC-039021	0.073	golgb1	-0.010
XLOC-001294	0.070	ptprga	-0.010
XLOC-029657	0.067	ndufs3	-0.010
LOC108190994	0.065	gtf2f1	-0.010
LOC101882249	0.062	ppp2r1bb	-0.010
her1	0.058	pinx1	-0.010
gabbr2	0.056	ddx18	-0.010
foxq2	0.056	rad23b	-0.009
si:ch211-191c10.3	0.052	mrps14	-0.009
FO681472.1	0.050	rpl36	-0.009
XLOC-041857	0.048	cavin2b	-0.009
LOC100002266.1	0.048	marcksl1b	-0.009
CR354430.3	0.046	ankhd1	-0.009
cnga3b	0.045	mpc2	-0.009
ANO7	0.045	hnrnpa1b	-0.009
camk1ga	0.045	top2b	-0.009
prnpb	0.044	amotl2a	-0.009
or108-2	0.042	smap1	-0.009
opn1lw1	0.041	znf346	-0.009
si:zfos-2372e4.1	0.041	rhocb	-0.009
ppp1r3db	0.039	eif3s6ip	-0.009
si:dkey-70b23.2	0.039	gsna	-0.009
rxfp3.3a3	0.039	cbx3a	-0.009
CABZ01061524.1	0.039	tead3b	-0.009
LOC108181454	0.039	pwwp2b	-0.009
arvcfa	0.038	eif4h	-0.009
arrdc1a	0.038	pou2f1b	-0.009