| Positive correlation | Negative correlation | ||
| Gene | r | Gene | r |
| dlx5a | 0.284 | fxyd1 | -0.128 |
| dlx2a | 0.270 | cthrc1a | -0.126 |
| mab21l1 | 0.268 | akap12b | -0.110 |
| barx1 | 0.246 | fstl1a | -0.110 |
| dlx1a | 0.242 | alx1 | -0.105 |
| lhx6 | 0.238 | col11a1a | -0.103 |
| dlx4a | 0.237 | tbx15 | -0.097 |
| prrx1b | 0.225 | BX324132.3 | -0.095 |
| dlx3b | 0.222 | foxc1a | -0.094 |
| dlx4b | 0.212 | pitx3 | -0.092 |
| dlx6a | 0.197 | myl9a | -0.091 |
| hapln1a | 0.193 | cxadr | -0.091 |
| hmx4 | 0.186 | raraa | -0.091 |
| shox | 0.173 | tmem88b | -0.089 |
| prrx1a | 0.168 | mia | -0.088 |
| lhx8a | 0.161 | pitx2 | -0.088 |
| hoxa2b | 0.156 | ptch2 | -0.088 |
| pou3f3a | 0.153 | apof | -0.086 |
| grem2b | 0.153 | foxd2 | -0.086 |
| LO018188.1 | 0.149 | col2a1a | -0.085 |
| spon2b | 0.149 | pbx1b | -0.083 |
| cald1b | 0.147 | hapln1b | -0.083 |
| lrba | 0.146 | pdgfrl | -0.082 |
| hpgd | 0.144 | cygb1 | -0.082 |
| ahcy | 0.142 | col11a2 | -0.082 |
| epha4b | 0.142 | tbx18 | -0.081 |
| ptmaa | 0.137 | ndnfl | -0.080 |
| hmgb1b | 0.132 | cnmd | -0.079 |
| znf503 | 0.132 | fgl1 | -0.078 |
| KCTD15 | 0.132 | tuba8l2 | -0.077 |
| ptgdsb.2 | 0.130 | crabp1b | -0.077 |
| meis2a | 0.130 | zgc:158423 | -0.077 |
| h3f3c | 0.129 | igfbp7 | -0.076 |
| sept5a | 0.129 | nid1b | -0.075 |
| pax9 | 0.128 | ctgfa | -0.074 |