| Positive correlation | Negative correlation | ||
| Gene | r | Gene | r |
| tfap2a | 0.315 | cldn5a | -0.066 |
| pou4f1 | 0.211 | sdc4 | -0.064 |
| hmx3a | 0.188 | XLOC-003689 | -0.063 |
| pou4f2 | 0.178 | hmgb2a | -0.063 |
| hmx2 | 0.172 | msna | -0.062 |
| nrn1a | 0.156 | gfap | -0.059 |
| XLOC-023447 | 0.148 | XLOC-003690 | -0.058 |
| tfap2b | 0.144 | si:ch73-265d7.2 | -0.057 |
| KCTD15 | 0.141 | her15.1 | -0.054 |
| lhx5 | 0.126 | sox3 | -0.054 |
| lhx1a | 0.123 | sparc | -0.054 |
| foxd3 | 0.122 | sox19a | -0.053 |
| scrt1a | 0.120 | btg2 | -0.053 |
| ebf3a | 0.110 | ldlrad2 | -0.051 |
| uncx | 0.108 | vamp3 | -0.051 |
| tlx3b | 0.106 | sb:cb81 | -0.050 |
| dclk2a | 0.105 | plp1a | -0.049 |
| atcaya | 0.104 | mdka | -0.048 |
| slc17a6a | 0.101 | col28a2a | -0.047 |
| hoxa9a | 0.101 | stmn1a | -0.047 |
| uncx4.1 | 0.100 | her12 | -0.047 |
| robo3 | 0.099 | id1 | -0.047 |
| si:ch211-263k4.2 | 0.099 | si:ch73-281n10.2 | -0.046 |
| zfhx3 | 0.098 | COX7A2 (1 of many) | -0.045 |
| stxbp1a | 0.098 | msi1 | -0.045 |
| nrxn1a | 0.095 | notch3 | -0.045 |
| skor1a | 0.095 | nkx6.1 | -0.044 |
| rbfox3a | 0.095 | si:ch73-21g5.7 | -0.044 |
| tfap2e | 0.094 | zgc:56493 | -0.044 |
| slc35g2b | 0.094 | mir219-3 | -0.044 |
| iqsec1b | 0.093 | tuba8l | -0.043 |
| celf5a | 0.092 | ccng1 | -0.042 |
| ncanb | 0.089 | tspan7 | -0.042 |
| hoxb9a | 0.088 | fosab | -0.042 |
| tmeff1b | 0.088 | abhd6a | -0.042 |