| Positive correlation | Negative correlation | ||
| Gene | r | Gene | r |
| isl2b | 0.217 | dlx5a | -0.070 |
| bambia | 0.147 | dlx4a | -0.063 |
| foxf1 | 0.141 | mab21l2 | -0.061 |
| foxf2a | 0.138 | dlx2a | -0.059 |
| nkx2.5 | 0.130 | fmoda | -0.058 |
| si:ch211-267e7.3 | 0.111 | fxyd1 | -0.057 |
| nkx2.7 | 0.111 | dlx3b | -0.057 |
| isl1 | 0.104 | dlx1a | -0.057 |
| tmem88b | 0.099 | ca6 | -0.055 |
| hlx1 | 0.098 | serpinf1 | -0.054 |
| cxcl12b | 0.098 | si:dkey-16p21.8 | -0.053 |
| mmel1 | 0.097 | vwde | -0.053 |
| rspo3 | 0.094 | bhmt | -0.052 |
| pln | 0.092 | dlx4b | -0.051 |
| satb2 | 0.091 | rbp4 | -0.051 |
| BX324132.3 | 0.091 | si:dkey-12l12.1 | -0.050 |
| nkx3.3 | 0.090 | emx2 | -0.049 |
| tmem98 | 0.090 | asip2b | -0.049 |
| BX005254.3 | 0.089 | dlx6a | -0.049 |
| evx1 | 0.089 | rgmd | -0.048 |
| prph | 0.088 | lamc3 | -0.048 |
| cdx4 | 0.087 | zic2a | -0.047 |
| si:dkey-222b8.1 | 0.086 | sparc | -0.047 |
| meis3 | 0.086 | zic1 | -0.045 |
| bcam | 0.085 | reck | -0.044 |
| cdh6 | 0.084 | foxd1 | -0.043 |
| grem1a | 0.084 | apof | -0.042 |
| alcamb | 0.082 | nkd3 | -0.042 |
| fbn2a.1 | 0.081 | arpc1b | -0.040 |
| XLOC-028299 | 0.081 | col1a1a | -0.040 |
| pcdh9 | 0.081 | twist3 | -0.039 |
| gdf6a | 0.079 | tfpia | -0.039 |
| smad9 | 0.078 | col11a1a | -0.039 |
| fbln1 | 0.078 | shox | -0.039 |
| tcf21 | 0.078 | col1a2 | -0.039 |