| Positive correlation | Negative correlation | ||
| Gene | r | Gene | r |
| pax3a | 0.382 | elavl3 | -0.173 |
| mdka | 0.354 | gng3 | -0.172 |
| boc | 0.351 | elavl4 | -0.163 |
| prss35 | 0.326 | sncb | -0.162 |
| gas1b | 0.316 | gng2 | -0.160 |
| zic1 | 0.300 | stxbp1a | -0.159 |
| slc1a3a | 0.299 | vamp2 | -0.156 |
| fzd10 | 0.293 | stx1b | -0.155 |
| msx1b | 0.282 | myt1b | -0.151 |
| zic2a | 0.274 | rtn1b | -0.150 |
| zic2b | 0.268 | stmn1b | -0.150 |
| msx3 | 0.264 | rtn1a | -0.149 |
| zic5 | 0.261 | snap25a | -0.149 |
| si:ch211-251b21.1 | 0.256 | cplx2 | -0.145 |
| mdkb | 0.254 | atp6v0cb | -0.145 |
| zic3 | 0.247 | nkx6.1 | -0.143 |
| pdgfaa | 0.242 | gap43 | -0.142 |
| zic4 | 0.239 | calm1a | -0.141 |
| gdf10a | 0.235 | ywhah | -0.141 |
| id1 | 0.217 | nsg2 | -0.140 |
| sox3 | 0.213 | syt2a | -0.139 |
| lbx1b | 0.195 | jagn1a | -0.139 |
| cdon | 0.193 | sulf2b | -0.138 |
| AL845362.1 | 0.191 | stmn2a | -0.138 |
| tes | 0.191 | tmem59l | -0.136 |
| gsx2 | 0.188 | ntn1a | -0.136 |
| axin2 | 0.184 | onecut1 | -0.135 |
| XLOC-003690 | 0.183 | id4 | -0.134 |
| hs3st3b1a | 0.182 | zc4h2 | -0.134 |
| wls | 0.177 | csdc2a | -0.133 |
| gsx1 | 0.175 | mllt11 | -0.132 |
| olig3 | 0.175 | calm2a | -0.132 |
| cldn5a | 0.171 | rbfox1 | -0.132 |
| tnfrsf19 | 0.168 | ywhag2 | -0.132 |
| prdm13 | 0.167 | dpysl3 | -0.132 |