| Positive correlation | Negative correlation | ||
| Gene | r | Gene | r |
| emx3 | 0.212 | zgc:165461 | -0.060 |
| eomesa | 0.188 | sox21a | -0.050 |
| tbr1a | 0.181 | pax7a | -0.049 |
| CDHR1 (1 of many) | 0.154 | ephb3 | -0.047 |
| tbr1b | 0.140 | ascl1b | -0.045 |
| cdon | 0.127 | CU634008.1 | -0.045 |
| foxg1a | 0.120 | en2b | -0.045 |
| r3hdm1 | 0.116 | si:ch73-21g5.7 | -0.044 |
| tbx21 | 0.110 | ebf2 | -0.043 |
| zic1 | 0.102 | dbx1a | -0.043 |
| fezf2 | 0.100 | si:ch73-30b17.2 | -0.043 |
| sipa1l2 | 0.097 | gsx1 | -0.042 |
| rspo3 | 0.091 | si:ch211-57n23.4 | -0.042 |
| tmem163b | 0.090 | ptmab | -0.038 |
| gas1a | 0.084 | BX511161.1 | -0.038 |
| necab1 | 0.083 | irx5a | -0.036 |
| zic2a | 0.082 | myt1b | -0.035 |
| sstr1a | 0.082 | ntn1a | -0.035 |
| camk2n1a | 0.082 | si:ch73-386h18.1 | -0.035 |
| fosab | 0.080 | rpl38 | -0.035 |
| slc17a6a | 0.079 | otpb | -0.034 |
| msx1b | 0.078 | helt | -0.034 |
| gdf10a | 0.078 | tal2 | -0.034 |
| neurod6b | 0.077 | si:dkey-151g10.6 | -0.033 |
| si:dkey-22o12.2 | 0.077 | rps29 | -0.033 |
| ek1 | 0.077 | LOC101882472 | -0.033 |
| ptprdb | 0.076 | lbx2 | -0.033 |
| cdh6 | 0.075 | sulf2a | -0.033 |
| zic4 | 0.075 | hmgb2b | -0.033 |
| emx1 | 0.075 | CABZ01093502.1 | -0.033 |
| mef2aa | 0.075 | rpl29 | -0.033 |
| cpne2 | 0.074 | si:ch1073-80i24.3 | -0.033 |
| fzd10 | 0.072 | pou3f2a | -0.033 |
| zic5 | 0.071 | hapln1a | -0.033 |
| mdkb | 0.071 | polr3gla | -0.032 |